Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VZ52_RS14430 Genome accession   NZ_CP011257
Coordinates   3012301..3014823 (+) Length   840 a.a.
NCBI ID   WP_063393277.1    Uniprot ID   -
Organism   Ralstonia mannitolilytica strain SN83A39     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3007301..3019823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZ52_RS14410 (VZ52_14420) - 3008273..3009340 (-) 1068 WP_063393275.1 hypothetical protein -
  VZ52_RS14415 (VZ52_14425) - 3009424..3010674 (+) 1251 WP_063393276.1 lipoprotein-releasing ABC transporter permease subunit -
  VZ52_RS14420 (VZ52_14430) lolD 3010667..3011395 (+) 729 WP_045786493.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VZ52_RS14425 (VZ52_14435) - 3011480..3012292 (+) 813 WP_063393730.1 TatD family hydrolase -
  VZ52_RS14430 (VZ52_14440) comA 3012301..3014823 (+) 2523 WP_063393277.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VZ52_RS14435 (VZ52_14445) - 3014928..3016412 (+) 1485 WP_063393278.1 circularly permuted type 2 ATP-grasp protein -
  VZ52_RS14440 (VZ52_14450) - 3016459..3017409 (+) 951 WP_062739266.1 alpha-E domain-containing protein -
  VZ52_RS14445 (VZ52_14455) - 3017467..3018303 (+) 837 WP_063393731.1 transglutaminase family protein -
  VZ52_RS14450 (VZ52_14460) - 3018402..3019304 (+) 903 WP_063393279.1 hypothetical protein -

Sequence

Protein


Download         Length: 840 a.a.        Molecular weight: 90306.71 Da        Isoelectric Point: 9.6649

>NTDB_id=144005 VZ52_RS14430 WP_063393277.1 3012301..3014823(+) (comA) [Ralstonia mannitolilytica strain SN83A39]
MRFVLIGFVAGCMALQMQPALAPLWQPLAVLMLCLLLCARVQRRPVWACVLLTTSAVAAGFGWSDWRAQQRLSMVLSPAW
EGKDIIATGVVAELPQIGEDATRFLFQIESSNAADAVPPRVRLSWYGTRSWAGAGEDTADVDRRAGIPDLQPGQRWKLTL
RLKRPHTLMNPGGFDGEYAMLADNVRATGYVRTGKRAQNVALGKADGGFGMRVERWRAAVRRHILSALPKARYAPVIVAL
VVGDQSGIAREDWELFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFGLTRWLRTPLPLRMPTPRAGAIAAMLAAF
GYCLLAGMGVPAQRTLLMLSTVAVARLTDRSVPASLSLCWAAAVVVAVDPWAVMSAGFWLSFGAVAIIFIAAQIALGSPR
HAESEGWGARILRSVARATRVQLAVTFGLLPATLLLFQQASVVSAAANGLAIPVVSFVTTPLALIGAALPAPLAPPVLAL
SEASFGWLVAWLEWVAQPRWSVWVAPVAPAWALLLATGGVALMLVPGAHRAWAWRAQGAMLLLPMVLARNPVPAVGEFRL
VAFDIGQGAAVLVETARHQLLFDTGPRYGDNADAAARVITPYLRTHGVEALDTLVVSHADSDHAGGTETVINAVPVRTML
ASLPQTHRLRDVAQAHGASFADCVAGQAWTWDGVDFEVLHPLRVPADDERVSSNGRSCVLRIGNGRHAALLAGDIEAAQE
AALVEAEPPERLMADILLVPHHGSKTSSSGAFLDAVSAQVAIFQVGYRNRYGHPHPRVWQRYEARGIDGLRTDQTGAVVI
QTGGDVLDIQTARSMRPRYWSSAHEVQALATVTDANDALP

Nucleotide


Download         Length: 2523 bp        

>NTDB_id=144005 VZ52_RS14430 WP_063393277.1 3012301..3014823(+) (comA) [Ralstonia mannitolilytica strain SN83A39]
ATGCGCTTCGTGTTGATCGGCTTCGTGGCCGGCTGCATGGCATTGCAGATGCAGCCGGCGCTCGCGCCGTTGTGGCAGCC
GCTCGCGGTGCTGATGCTGTGCTTGCTGCTCTGTGCGCGCGTGCAGCGGCGGCCGGTGTGGGCGTGCGTGTTGTTGACGA
CCAGCGCCGTCGCGGCCGGTTTCGGCTGGAGCGACTGGCGGGCACAGCAGCGACTCTCAATGGTGTTGAGCCCCGCGTGG
GAAGGCAAGGACATCATCGCCACAGGGGTCGTGGCCGAGCTGCCACAGATTGGCGAGGACGCCACGCGGTTCCTGTTCCA
GATCGAATCCAGCAATGCAGCGGACGCCGTGCCGCCGCGCGTGCGCCTGTCGTGGTACGGCACGCGCAGCTGGGCTGGCG
CCGGCGAGGACACCGCCGATGTAGACCGGCGCGCCGGTATTCCAGACCTGCAACCCGGCCAGCGCTGGAAGTTGACCCTG
CGTCTCAAGCGCCCACACACGCTGATGAACCCGGGAGGCTTCGACGGCGAATACGCAATGCTGGCCGACAACGTGCGCGC
CACCGGCTACGTGCGCACCGGCAAGCGCGCGCAGAACGTTGCGCTGGGCAAGGCGGATGGCGGCTTCGGAATGCGCGTCG
AGCGCTGGCGGGCCGCAGTGCGGCGCCACATCCTTAGCGCGTTGCCGAAGGCGCGCTACGCACCGGTGATCGTCGCGCTG
GTGGTGGGCGACCAGAGCGGCATCGCCCGCGAAGACTGGGAGCTGTTCCGCCGCACCGGCATCAGTCATCTGGTCAGTAT
TTCGGGTCTGCACATCACCATGATTGCCGGGCTCTTTGCTGCGCTCTGGATGGCGCTGTGGCGCCGCTCGTTCGGGCTCA
CACGCTGGCTGCGCACGCCGCTGCCGCTGCGCATGCCGACCCCGCGTGCGGGCGCCATCGCTGCCATGCTCGCGGCCTTC
GGTTACTGCCTGCTTGCCGGCATGGGCGTGCCGGCACAGCGCACGCTGCTGATGCTGTCCACCGTCGCCGTCGCCCGGCT
GACCGATCGCAGCGTGCCGGCGAGCCTGTCGCTATGCTGGGCGGCCGCCGTGGTGGTGGCGGTGGATCCGTGGGCGGTGA
TGTCAGCGGGGTTCTGGCTGTCATTCGGCGCGGTGGCGATCATCTTCATCGCGGCGCAGATCGCATTGGGTAGTCCGCGC
CATGCCGAGTCGGAAGGGTGGGGCGCGCGCATACTGCGCAGCGTTGCCCGCGCCACGCGTGTTCAACTTGCCGTCACGTT
CGGGCTGTTGCCGGCGACCTTGCTGCTGTTTCAGCAGGCATCGGTGGTCTCTGCCGCTGCCAACGGGCTGGCGATCCCGG
TGGTCAGCTTCGTGACCACGCCGCTGGCGCTGATCGGCGCCGCGTTGCCCGCTCCGCTCGCTCCGCCCGTGCTGGCCTTG
TCCGAAGCGAGCTTCGGGTGGCTGGTGGCGTGGCTCGAATGGGTGGCGCAACCGCGCTGGTCCGTCTGGGTGGCACCGGT
GGCCCCTGCCTGGGCGCTGTTGCTGGCGACAGGTGGCGTGGCGCTGATGCTCGTGCCAGGTGCGCACCGCGCGTGGGCAT
GGCGGGCGCAGGGCGCGATGCTGCTCCTGCCGATGGTGCTGGCGCGCAATCCCGTGCCGGCGGTGGGCGAGTTCCGCCTG
GTGGCTTTCGATATCGGCCAGGGTGCCGCCGTGCTGGTCGAGACGGCCCGGCACCAATTGCTGTTCGACACCGGCCCCCG
GTATGGGGACAACGCCGATGCCGCCGCCCGGGTCATCACGCCGTACCTGCGCACGCACGGGGTGGAGGCGCTCGACACGC
TCGTCGTCAGCCATGCAGACAGCGACCACGCCGGCGGCACCGAAACGGTGATCAACGCGGTGCCTGTGCGCACCATGTTG
GCGTCTTTGCCGCAAACGCACCGGCTGCGCGATGTGGCGCAGGCCCACGGAGCCTCGTTTGCTGACTGCGTGGCAGGGCA
GGCCTGGACCTGGGACGGCGTGGACTTCGAGGTCCTGCACCCCCTGCGCGTGCCGGCCGACGATGAGCGCGTGTCCAGCA
ACGGCCGCAGCTGTGTTCTGCGCATCGGCAACGGCCGCCACGCCGCGCTGCTGGCGGGCGACATCGAAGCCGCGCAGGAA
GCGGCCTTGGTGGAAGCCGAGCCGCCCGAGCGCCTGATGGCAGACATCTTGCTTGTACCGCATCACGGCAGCAAGACAAG
CTCCAGCGGCGCGTTCTTGGACGCGGTGTCCGCACAAGTGGCGATTTTCCAGGTCGGCTACCGTAACCGGTATGGGCACC
CGCACCCCCGGGTGTGGCAGCGCTACGAGGCGCGCGGCATCGACGGCTTGCGCACCGACCAGACCGGCGCCGTGGTCATC
CAGACCGGCGGTGATGTGCTCGATATCCAGACCGCGCGCTCGATGCGGCCGCGGTACTGGTCTTCCGCACACGAGGTGCA
GGCCCTGGCGACGGTCACGGACGCAAATGATGCGCTGCCGTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(578-739)

Competence protein (Competence)

(240-525)

Domain of unknown function (DUF4131) (DUF4131)

(23-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

74.616

100

0.752

Multiple sequence alignment