Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   WV34_RS06320 Genome accession   NZ_CP011252
Coordinates   1210480..1212309 (+) Length   609 a.a.
NCBI ID   WP_088613841.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205480..1217309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS06295 (WV34_06175) - 1206143..1206721 (+) 579 WP_088612592.1 GNAT family N-acetyltransferase -
  WV34_RS06300 (WV34_06180) spx 1206899..1207294 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  WV34_RS06305 (WV34_06185) - 1207352..1208008 (-) 657 WP_065521689.1 TerC family protein -
  WV34_RS20055 - 1208191..1208293 (+) 103 Protein_1179 hypothetical protein -
  WV34_RS06310 (WV34_06190) mecA 1208284..1208940 (+) 657 WP_014470612.1 adaptor protein MecA Regulator
  WV34_RS06315 (WV34_06195) - 1209091..1210251 (+) 1161 WP_088612593.1 competence protein CoiA family protein -
  WV34_RS06320 (WV34_06200) pepF 1210480..1212309 (+) 1830 WP_088613841.1 oligoendopeptidase F Regulator
  WV34_RS20115 (WV34_06205) - 1212345..1212512 (-) 168 WP_016938224.1 hypothetical protein -
  WV34_RS06330 (WV34_06210) spxH 1212797..1213699 (-) 903 WP_013351835.1 protease adaptor protein SpxH -
  WV34_RS06335 (WV34_06215) - 1213696..1214094 (-) 399 WP_013351836.1 thiol management oxidoreductase -
  WV34_RS06340 (WV34_06220) - 1214319..1215005 (-) 687 WP_088612594.1 lytic transglycosylase domain-containing protein -
  WV34_RS06345 (WV34_06225) - 1215010..1215585 (-) 576 WP_088612595.1 CYTH domain-containing protein -
  WV34_RS06350 (WV34_06230) - 1215710..1216075 (+) 366 WP_013351839.1 hypothetical protein -
  WV34_RS06355 (WV34_06235) yjbM 1216103..1216738 (+) 636 WP_013351840.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69758.42 Da        Isoelectric Point: 5.4385

>NTDB_id=143875 WV34_RS06320 WP_088613841.1 1210480..1212309(+) (pepF) [Bacillus amyloliquefaciens strain MT45]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKVYSHAIEEITKQRPHVLSEK
EEALLAEASEALSSPSNTFSVLNNADITFPSIKDENGKETQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNNIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHNYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGDEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDTVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLNKLYYDLNKKYFGENMVIDEEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTNFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=143875 WV34_RS06320 WP_088613841.1 1210480..1212309(+) (pepF) [Bacillus amyloliquefaciens strain MT45]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCAGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CGCTTGCTCATTCAGCCGATAATTTATACGCGGCGCTTACCGCACAGGATGAAGTGACGAGCCGTCTGGGAAAACTTTAT
GCATACGCGCATATGCGCTCAGATCAGGATACGGGAAATTCTTTCTACCAAGGACTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCCGCCAGTGCGACTGCTTACATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAAGAGCTTAAGGTTTACTCCCATGCCATTGAAGAAATTACAAAACAGCGTCCTCACGTGCTGAGCGAAAAA
GAAGAGGCCCTGCTTGCGGAAGCTTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGTGTTTTAAACAACGCCGATAT
TACGTTTCCGTCGATAAAAGATGAAAACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAATTTTCTGGAAAGCA
GCGATCGTGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAACACGATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGATAATTTCTACGCCCGGGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAACATCCCTGAAGAAGTTTATGATAACCTTATCAAAACGATCAATAAACATCTTCCGTTATTGCACCGTTACATTG
ATCTGCGGAAAAAGGTGCTCGGCCTTGATGAAGTCCATAATTATGACCTGTACACACCGCTTGTAAAAGATTCGGGAATG
AAGGTCACATATGAAGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGATGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTAATGAACTGGCACGACACTGTCAATAATCTGTTTACGCTCGTTCACGAGTTCGGCCATTCG
GTGCACAGCTACTATACGAGAAAATATCAGCCGTATCCGTACGGAAACTACAGCATTTTTGTCGCTGAAGTCGCTTCTAC
GACCAATGAAGCGCTGCTCGGTGAATATATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTATCTTCTCAACCACA
TGCTTGAAGGTTTCAGAGGCACAGTCTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAA
GAAGGCGAGCCGTTAACGCCTGAACTGCTGAACAAGCTTTATTATGATCTGAATAAAAAGTATTTCGGAGAGAACATGGT
AATTGATGAAGAAATCAGCCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCTCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCAACTTCTTA
AAAGCCGGAAGCTCAGAATATCCGATCGACATCCTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAAGC
TGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAACTCCTTTCGAAAGTGAATCCTTCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

97.537

0.488

Multiple sequence alignment