Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WV34_RS01965 Genome accession   NZ_CP011252
Coordinates   385049..386002 (+) Length   317 a.a.
NCBI ID   WP_013351008.1    Uniprot ID   A0AAP7N4J3
Organism   Bacillus amyloliquefaciens strain MT45     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380049..391002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS01940 (WV34_01910) - 380090..381517 (+) 1428 WP_162495005.1 HAMP domain-containing sensor histidine kinase -
  WV34_RS01945 (WV34_01915) rapC 381676..382824 (+) 1149 WP_088612148.1 tetratricopeptide repeat protein Regulator
  WV34_RS01950 (WV34_01920) phrC 382808..382927 (+) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  WV34_RS01955 (WV34_01925) - 383075..383176 (-) 102 WP_013351006.1 YjcZ family sporulation protein -
  WV34_RS01960 (WV34_01930) - 383271..384635 (-) 1365 WP_088612149.1 aspartate kinase -
  WV34_RS01965 (WV34_01935) ceuB 385049..386002 (+) 954 WP_013351008.1 ABC transporter permease Machinery gene
  WV34_RS01970 (WV34_01940) - 385992..386939 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  WV34_RS01975 (WV34_01945) - 386933..387691 (+) 759 WP_088612150.1 ABC transporter ATP-binding protein -
  WV34_RS01980 (WV34_01950) - 387713..388663 (+) 951 WP_065521914.1 siderophore ABC transporter substrate-binding protein -
  WV34_RS01985 (WV34_01955) - 388705..390132 (-) 1428 WP_088612151.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.26 Da        Isoelectric Point: 9.6741

>NTDB_id=143860 WV34_RS01965 WP_013351008.1 385049..386002(+) (ceuB) [Bacillus amyloliquefaciens strain MT45]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=143860 WV34_RS01965 WP_013351008.1 385049..386002(+) (ceuB) [Bacillus amyloliquefaciens strain MT45]
ATGAAGCTACGTTACTTACTTTTGTTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCGAGGCTCGGTATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
CATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTTATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGCTACGAGCTTTTATACTTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAGTTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATCGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCAATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment