Detailed information NTG0143858

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: WV34_RS01945
• Genome accession: NZ_CP011252
• Coordinates: 381676..382824 (+)
• Length: 382 a.a.
• NCBI ID: WP_088612148.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MT45
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 376676..387824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WV34_RS01925 (WV34_01895)	-	377070..377753 (-)	684	WP_014469746.1	ABC transporter ATP-binding protein	-
WV34_RS01930 (WV34_01900)	-	377768..379207 (-)	1440	WP_088612145.1	ABC transporter permease	-
WV34_RS01935 (WV34_01905)	-	379420..380103 (+)	684	WP_088612146.1	response regulator transcription factor	-
WV34_RS01940 (WV34_01910)	-	380090..381517 (+)	1428	WP_162495005.1	HAMP domain-containing sensor histidine kinase	-
WV34_RS01945 (WV34_01915)	rapC	381676..382824 (+)	1149	WP_088612148.1	tetratricopeptide repeat protein	Regulator
WV34_RS01950 (WV34_01920)	phrC	382808..382927 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
WV34_RS01955 (WV34_01925)	-	383075..383176 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
WV34_RS01960 (WV34_01930)	-	383271..384635 (-)	1365	WP_088612149.1	aspartate kinase	-
WV34_RS01965 (WV34_01935)	ceuB	385049..386002 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
WV34_RS01970 (WV34_01940)	-	385992..386939 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
WV34_RS01975 (WV34_01945)	-	386933..387691 (+)	759	WP_088612150.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45678.05 Da
• Isoelectric Point: 5.2700

>NTDB_id=143858 WV34_RS01945 WP_088612148.1 381676..382824(+) (rapC) [Bacillus amyloliquefaciens strain MT45]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
IRTCFRYLEDKNLYADIEDLALEAAKYYYEQKCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=143858 WV34_RS01945 WP_088612148.1 381676..382824(+) (rapC) [Bacillus amyloliquefaciens strain MT45]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAGGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAC
GAAGCCATACCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGAACATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAAATGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.632	99.476	0.573