Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APT60_RS28025 Genome accession   NZ_CP013989
Coordinates   6112728..6113402 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6107728..6118402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT60_RS27995 (APT60_27995) - 6107902..6109236 (+) 1335 WP_016562488.1 aspartate aminotransferase family protein -
  APT60_RS28000 (APT60_28000) - 6109302..6109664 (+) 363 WP_003096551.1 cupin domain-containing protein -
  APT60_RS28005 (APT60_28005) rpmG 6109799..6109954 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  APT60_RS28010 (APT60_28010) rpmB 6109966..6110202 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  APT60_RS28015 (APT60_28015) - 6110557..6112137 (+) 1581 WP_003117158.1 ABC transporter substrate-binding protein -
  APT60_RS28020 (APT60_28020) - 6112163..6112711 (+) 549 WP_003098290.1 hypothetical protein -
  APT60_RS28025 (APT60_28025) radC 6112728..6113402 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  APT60_RS28030 (APT60_28030) coaBC 6113542..6114750 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  APT60_RS28035 (APT60_28035) dut 6114758..6115213 (+) 456 WP_003098293.1 dUTP diphosphatase -
  APT60_RS28040 (APT60_28040) - 6115250..6117856 (+) 2607 WP_003114359.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=143802 APT60_RS28025 WP_003096559.1 6112728..6113402(-) (radC) [Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=143802 APT60_RS28025 WP_003096559.1 6112728..6113402(-) (radC) [Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGTTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397