Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SMQ301_RS08955 Genome accession   NZ_CP011217
Coordinates   1715157..1716113 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710157..1721113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS08920 (SMQ301_1857) proC 1710717..1711487 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  SMQ301_RS08925 (SMQ301_1858) - 1711517..1712179 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  SMQ301_RS08930 (SMQ301_1859) - 1712276..1712719 (-) 444 WP_011681680.1 hypothetical protein -
  SMQ301_RS12620 (SMQ301_1860) - 1712793..1713131 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  SMQ301_RS12625 (SMQ301_1861) - 1713175..1713450 (-) 276 WP_011681681.1 hypothetical protein -
  SMQ301_RS08945 (SMQ301_1862) - 1713462..1713659 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  SMQ301_RS08950 (SMQ301_1863) - 1713908..1715101 (-) 1194 WP_014608740.1 acetate kinase -
  SMQ301_RS08955 (SMQ301_1864) comYH 1715157..1716113 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  SMQ301_RS08960 (SMQ301_1865) comGG 1716158..1716475 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  SMQ301_RS08965 (SMQ301_1866) comYF 1716453..1716890 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  SMQ301_RS08970 comGE 1716874..1717167 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  SMQ301_RS08975 (SMQ301_1868) comYD 1717139..1717567 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  SMQ301_RS08980 (SMQ301_1869) comYC 1717527..1717853 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  SMQ301_RS08985 (SMQ301_1870) comYB 1717850..1718950 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  SMQ301_RS08990 (SMQ301_1871) comYA 1718832..1719773 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  SMQ301_RS08995 (SMQ301_1872) - 1719854..1720216 (-) 363 WP_023909982.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=143649 SMQ301_RS08955 WP_011681684.1 1715157..1716113(-) (comYH) [Streptococcus thermophilus strain SMQ-301]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=143649 SMQ301_RS08955 WP_011681684.1 1715157..1716113(-) (comYH) [Streptococcus thermophilus strain SMQ-301]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment