Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/blpH   Type   Regulator
Locus tag   AVT04_RS11235 Genome accession   NZ_CP013939
Coordinates   1231312..1232115 (-) Length   267 a.a.
NCBI ID   WP_224103634.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   phosphorylation of ComE; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226312..1237115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS06610 (AVT04_06610) comA/nlmT 1227581..1229734 (+) 2154 WP_059257386.1 peptide cleavage/export ABC transporter Regulator
  AVT04_RS06615 (AVT04_06615) - 1229750..1231118 (+) 1369 Protein_1208 bacteriocin secretion accessory protein -
  AVT04_RS06620 (AVT04_06620) - 1231133..1231294 (+) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  AVT04_RS11235 comD/blpH 1231312..1232115 (-) 804 WP_224103634.1 ATP-binding protein Regulator
  AVT04_RS06630 (AVT04_06630) comE/blpR 1232652..1233383 (-) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor Regulator
  AVT04_RS06635 (AVT04_06635) - 1233633..1233875 (+) 243 WP_011227518.1 Blp family class II bacteriocin -
  AVT04_RS10020 - 1234021..1235411 (-) 1391 Protein_1213 IS3-like element ISSth1b family transposase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30835.17 Da        Isoelectric Point: 4.8309

>NTDB_id=143274 AVT04_RS11235 WP_224103634.1 1231312..1232115(-) (comD/blpH) [Streptococcus thermophilus strain S9]
MYLENTTHSSTLELRKLCVVISLVLFFIMIVFLERNIREMIQGQLDFQKNLQLENLYTYNKHIECLYNSVRSFRHDYSNL
LVTLRLGIDKDDMDIVKEVYDSVLQESDKRLNTRNFDLARLVNIQDNTLKSLLSAKVLQAEEEGIEAQISIPEPIHLIGM
EILDFIIVTSIFLDNAIEGAIQTQNHKITISFWEDHRSQLLSISNTISEEQTETKTIFERGVSNKGRERGIGLANVTEIL
DNYINVNLETQSNNFSFTQQLTITKKA

Nucleotide


Download         Length: 804 bp        

>NTDB_id=143274 AVT04_RS11235 WP_224103634.1 1231312..1232115(-) (comD/blpH) [Streptococcus thermophilus strain S9]
ATGTATCTTGAAAACACTACTCACTCTTCAACTTTGGAGCTTCGAAAACTCTGTGTTGTTATTTCACTTGTCCTCTTCTT
CATTATGATTGTCTTTTTAGAAAGAAACATTCGTGAAATGATTCAAGGACAATTGGACTTCCAGAAAAATCTCCAGCTAG
AGAATCTCTACACCTACAATAAACATATTGAATGTCTCTACAATTCTGTTCGTAGTTTTAGACACGATTATAGTAATCTC
TTAGTCACATTACGATTGGGGATAGATAAAGACGATATGGATATTGTCAAAGAAGTCTATGATAGTGTGCTTCAAGAATC
CGATAAACGATTAAATACAAGAAACTTTGACTTAGCTAGACTCGTTAATATTCAGGATAATACTTTGAAAAGCCTTCTGT
CCGCAAAAGTTTTACAAGCAGAAGAAGAAGGTATTGAAGCTCAGATTAGCATCCCAGAACCCATCCACTTGATTGGGATG
GAGATTCTGGACTTCATTATCGTCACTTCTATTTTTTTAGATAACGCTATTGAAGGTGCCATTCAAACTCAAAACCATAA
AATTACTATTAGCTTTTGGGAAGATCATCGTTCACAGCTATTATCTATTAGCAATACCATAAGTGAAGAACAAACAGAAA
CTAAAACCATATTTGAAAGAGGTGTCTCCAACAAGGGACGAGAGCGAGGCATTGGCCTTGCTAATGTCACAGAAATCTTA
GATAACTATATCAATGTAAACTTAGAAACACAGAGTAACAATTTCTCATTCACACAACAATTAACAATAACTAAAAAGGC
CTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(160-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/blpH Streptococcus mutans UA159

38.189

95.131

0.363

Multiple sequence alignment