Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   AVT04_RS06630 Genome accession   NZ_CP013939
Coordinates   1232652..1233383 (-) Length   243 a.a.
NCBI ID   WP_002948869.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227652..1238383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS06615 (AVT04_06615) - 1229750..1231118 (+) 1369 Protein_1208 bacteriocin secretion accessory protein -
  AVT04_RS06620 (AVT04_06620) - 1231133..1231294 (+) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  AVT04_RS11235 comD/blpH 1231312..1232115 (-) 804 WP_224103634.1 ATP-binding protein Regulator
  AVT04_RS06630 (AVT04_06630) comE/blpR 1232652..1233383 (-) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor Regulator
  AVT04_RS06635 (AVT04_06635) - 1233633..1233875 (+) 243 WP_011227518.1 Blp family class II bacteriocin -
  AVT04_RS10020 - 1234021..1235411 (-) 1391 Protein_1213 IS3-like element ISSth1b family transposase -
  AVT04_RS06655 (AVT04_06655) - 1235854..1238121 (-) 2268 WP_011227515.1 Xaa-Pro dipeptidyl-peptidase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27803.11 Da        Isoelectric Point: 6.9136

>NTDB_id=143243 AVT04_RS06630 WP_002948869.1 1232652..1233383(-) (comE/blpR) [Streptococcus thermophilus strain S9]
MKIYLLEDNSIQMGRLEEAVAHELKSFGKDLSCVQSFDKPDQLLSAITSNTSDQIFFLDIEIKGEDKKGLDIAKIIRQNN
PYAIIAFVTTHIEFMPQAFGVTAYKYINKTLDEASFRKEIGETIAQVFPINATTTDEFFLYKTESQLINLPMDQILYLST
SDIKHHVHLQTIHTLMDIRANLADFKKIHKKLYPCHRSYIVNTDMIISVNKTNYEATLINGQVLPVSRMKIGKIAQIVEE
RGR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=143243 AVT04_RS06630 WP_002948869.1 1232652..1233383(-) (comE/blpR) [Streptococcus thermophilus strain S9]
TTGAAGATTTACCTATTAGAAGATAATTCTATTCAGATGGGTCGCTTGGAAGAGGCTGTGGCACATGAACTTAAATCCTT
CGGAAAAGATCTATCTTGTGTCCAGTCTTTTGACAAACCTGACCAGTTGTTATCGGCTATCACTTCTAATACAAGCGATC
AGATTTTCTTTCTTGATATTGAAATTAAAGGTGAAGATAAGAAGGGACTTGATATCGCTAAAATCATACGTCAAAATAAC
CCTTATGCTATCATTGCCTTTGTCACTACACATATAGAGTTCATGCCTCAAGCTTTTGGCGTTACAGCCTATAAATACAT
CAATAAAACCTTAGATGAAGCTAGCTTTAGAAAAGAAATAGGGGAAACCATTGCTCAAGTCTTCCCTATTAACGCAACTA
CCACGGATGAGTTTTTTCTCTACAAAACAGAGTCTCAATTAATAAACCTTCCTATGGATCAAATTCTATACCTATCCACA
TCAGATATCAAACACCATGTTCACCTCCAGACTATCCATACCCTCATGGATATCCGAGCAAATCTGGCAGACTTTAAAAA
GATACACAAAAAGCTCTACCCATGCCATCGGTCCTATATCGTCAATACAGATATGATCATCTCTGTCAACAAGACCAATT
ATGAAGCTACCTTAATTAATGGTCAAGTTCTACCAGTATCCCGTATGAAAATAGGAAAGATTGCACAGATTGTTGAGGAA
AGAGGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(17-119)

LytTr DNA-binding domain (LytTR)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

35.628

100

0.362

Multiple sequence alignment