Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AVT04_RS07750 Genome accession   NZ_CP013939
Coordinates   1448101..1449027 (+) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   Q5M3H5
Organism   Streptococcus thermophilus strain S9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1443101..1454027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS07740 (AVT04_07740) amiA 1444579..1446546 (+) 1968 WP_059257397.1 peptide ABC transporter substrate-binding protein Regulator
  AVT04_RS07745 (AVT04_07745) amiC 1446608..1448101 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  AVT04_RS07750 (AVT04_07750) amiD 1448101..1449027 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  AVT04_RS07755 (AVT04_07755) amiE 1449037..1450122 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS07760 (AVT04_07760) - 1450115..1451044 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  AVT04_RS07765 (AVT04_07765) - 1451094..1451879 (-) 786 WP_002951425.1 hypothetical protein -
  AVT04_RS07770 (AVT04_07770) - 1451891..1452589 (-) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  AVT04_RS07775 (AVT04_07775) - 1452594..1452971 (-) 378 WP_011226300.1 GntR family transcriptional regulator -
  AVT04_RS07780 (AVT04_07780) - 1453154..1453948 (+) 795 WP_059257398.1 HAD hydrolase family protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=143257 AVT04_RS07750 WP_002946409.1 1448101..1449027(+) (amiD) [Streptococcus thermophilus strain S9]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=143257 AVT04_RS07750 WP_002946409.1 1448101..1449027(+) (amiD) [Streptococcus thermophilus strain S9]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment