Detailed information NTG0143221

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AVT04_RS05060
• Genome accession: NZ_CP013939
• Coordinates: 943934..945034 (-)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain S9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 938934..950034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVT04_RS05045 (AVT04_05045)	-	939785..940657 (-)	873	WP_011227628.1	YitT family protein	-
AVT04_RS05050 (AVT04_05050)	trpS	941085..942107 (+)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
AVT04_RS05055 (AVT04_05055)	guaB	942284..943765 (+)	1482	WP_011227627.1	IMP dehydrogenase	-
AVT04_RS05060 (AVT04_05060)	recF	943934..945034 (-)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
AVT04_RS05065 (AVT04_05065)	yaaA	945037..945414 (-)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
AVT04_RS05070 (AVT04_05070)	yfmF	945492..946742 (+)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
AVT04_RS05075 (AVT04_05075)	yfmH	946744..948022 (+)	1279	Protein_920	EF-P 5-aminopentanol modification-associated protein YfmH	-
AVT04_RS05080 (AVT04_05080)	-	948081..948938 (+)	858	WP_011226703.1	helix-turn-helix domain-containing protein	-
AVT04_RS05085 (AVT04_05085)	pgsA	948951..949493 (+)	543	WP_011227624.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=143221 AVT04_RS05060 WP_002947786.1 943934..945034(-) (recF) [Streptococcus thermophilus strain S9]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=143221 AVT04_RS05060 WP_002947786.1 943934..945034(-) (recF) [Streptococcus thermophilus strain S9]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432