Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TP50_RS20910 Genome accession   NZ_CP011163
Coordinates   4598962..4600482 (+) Length   506 a.a.
NCBI ID   WP_007974562.1    Uniprot ID   -
Organism   Xanthomonas citri pv. aurantifolii strain FDC 1609     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4593962..4605482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TP50_RS20885 (TP50_20490) - 4594811..4595467 (+) 657 WP_007974558.1 RIO1 family regulatory kinase/ATPase -
  TP50_RS20890 (TP50_20495) - 4595670..4597655 (-) 1986 WP_007974560.1 beta-N-acetylglucosaminidase domain-containing protein -
  TP50_RS20900 (TP50_20500) - 4598139..4598513 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  TP50_RS20905 (TP50_20505) - 4598668..4598946 (+) 279 WP_022560200.1 accessory factor UbiK family protein -
  TP50_RS20910 (TP50_20510) comM 4598962..4600482 (+) 1521 WP_007974562.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TP50_RS20915 (TP50_20515) - 4600823..4601332 (+) 510 WP_042806184.1 lipocalin family protein -
  TP50_RS24785 (TP50_20520) - 4601563..4601739 (-) 177 WP_017158194.1 hypothetical protein -
  TP50_RS20925 (TP50_20525) - 4602121..4603683 (+) 1563 WP_042806185.1 EAL domain-containing protein -
  TP50_RS20930 (TP50_20530) - 4603748..4604869 (-) 1122 WP_007974568.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53890.53 Da        Isoelectric Point: 8.1563

>NTDB_id=143063 TP50_RS20910 WP_007974562.1 4598962..4600482(+) (comM) [Xanthomonas citri pv. aurantifolii strain FDC 1609]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAADGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAISSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=143063 TP50_RS20910 WP_007974562.1 4598962..4600482(+) (comM) [Xanthomonas citri pv. aurantifolii strain FDC 1609]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGCGCTGCCCTGC
TGTGCGCACAGTTCGAATTCCCTGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTATGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAGCCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGATGGGCACCATC
TGTTGCTGGTCGGCAGCCCTGGTTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCAGCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CCCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
CGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

54.795

100

0.553
  comM Glaesserella parasuis strain SC1401

53.649

100

0.538
  comM Vibrio campbellii strain DS40M4

53.557

100

0.536
  comM Legionella pneumophila str. Paris

51.107

98.221

0.502
  comM Legionella pneumophila strain ERS1305867

51.107

98.221

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.453

Multiple sequence alignment