Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MGAS23530_RS08135 Genome accession   NZ_CP013839
Coordinates   1693897..1695003 (+) Length   368 a.a.
NCBI ID   WP_053039079.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS23530     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688897..1700003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGAS23530_RS08115 (MGAS23530_1667) hasA 1689575..1690834 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  MGAS23530_RS08120 (MGAS23530_1668) hasB 1690870..1692078 (+) 1209 WP_002991442.1 UDP-glucose 6-dehydrogenase HasB -
  MGAS23530_RS08125 (MGAS23530_1669) hasC 1692260..1693174 (+) 915 WP_002982024.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  MGAS23530_RS08130 (MGAS23530_1670) yaaA 1693482..1693895 (+) 414 WP_053039078.1 S4 domain-containing protein YaaA -
  MGAS23530_RS08135 (MGAS23530_1671) recF 1693897..1695003 (+) 1107 WP_053039079.1 DNA replication/repair protein RecF Machinery gene
  MGAS23530_RS08140 (MGAS23530_1672) - 1695060..1695923 (-) 864 WP_002992310.1 GRP family sugar transporter -
  MGAS23530_RS08145 (MGAS23530_1673) guaB 1696125..1697606 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  MGAS23530_RS08150 (MGAS23530_1674) trpS 1697914..1698936 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41713.65 Da        Isoelectric Point: 8.9543

>NTDB_id=142902 MGAS23530_RS08135 WP_053039079.1 1693897..1695003(+) (recF) [Streptococcus pyogenes strain MGAS23530]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKALIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNQQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=142902 MGAS23530_RS08135 WP_053039079.1 1693897..1695003(+) (recF) [Streptococcus pyogenes strain MGAS23530]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGCATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCAGCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.187

100

0.459

Multiple sequence alignment