Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VT48_RS14725 Genome accession   NZ_CP011150
Coordinates   2873343..2873984 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain W3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868343..2878984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS14690 (VT48_14690) - 2869471..2869902 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  VT48_RS14695 (VT48_14695) - 2869902..2870243 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  VT48_RS14700 (VT48_14700) - 2870236..2871714 (+) 1479 WP_046344384.1 Na+/H+ antiporter subunit D -
  VT48_RS14705 (VT48_14705) - 2871721..2872200 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  VT48_RS14710 (VT48_14710) - 2872200..2872481 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  VT48_RS14715 (VT48_14715) mnhG 2872465..2872839 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  VT48_RS14720 (VT48_14720) - 2872930..2873319 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  VT48_RS14725 (VT48_14725) comA 2873343..2873984 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  VT48_RS14730 (VT48_14730) comP 2874065..2876371 (-) 2307 WP_017358942.1 ATP-binding protein Regulator
  VT48_RS14735 (VT48_14735) comX 2876385..2876555 (-) 171 WP_017358941.1 competence pheromone ComX -
  VT48_RS14740 (VT48_14740) - 2876533..2877456 (-) 924 WP_017367962.1 polyprenyl synthetase family protein -
  VT48_RS14745 (VT48_14745) degQ 2877608..2877748 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  VT48_RS14750 (VT48_14750) - 2878254..2878607 (+) 354 WP_017358939.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=142851 VT48_RS14725 WP_007500477.1 2873343..2873984(-) (comA) [Bacillus altitudinis strain W3]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=142851 VT48_RS14725 WP_007500477.1 2873343..2873984(-) (comA) [Bacillus altitudinis strain W3]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGACGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment