Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MGAS11027_RS08625 Genome accession   NZ_CP013838
Coordinates   1771378..1772484 (+) Length   368 a.a.
NCBI ID   WP_053039079.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS11027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1766378..1777484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGAS11027_RS08605 (MGAS11027_1759) hasA 1767056..1768315 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  MGAS11027_RS08610 (MGAS11027_1760) hasB 1768351..1769559 (+) 1209 WP_002991442.1 UDP-glucose 6-dehydrogenase HasB -
  MGAS11027_RS08615 (MGAS11027_1761) hasC 1769741..1770655 (+) 915 WP_002982024.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  MGAS11027_RS08620 (MGAS11027_1762) yaaA 1770963..1771376 (+) 414 WP_053039078.1 S4 domain-containing protein YaaA -
  MGAS11027_RS08625 (MGAS11027_1763) recF 1771378..1772484 (+) 1107 WP_053039079.1 DNA replication/repair protein RecF Machinery gene
  MGAS11027_RS08630 (MGAS11027_1764) - 1772541..1773404 (-) 864 WP_002992310.1 GRP family sugar transporter -
  MGAS11027_RS08635 (MGAS11027_1765) guaB 1773606..1775087 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  MGAS11027_RS08640 (MGAS11027_1766) trpS 1775395..1776417 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41713.65 Da        Isoelectric Point: 8.9543

>NTDB_id=142811 MGAS11027_RS08625 WP_053039079.1 1771378..1772484(+) (recF) [Streptococcus pyogenes strain MGAS11027]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKALIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNQQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=142811 MGAS11027_RS08625 WP_053039079.1 1771378..1772484(+) (recF) [Streptococcus pyogenes strain MGAS11027]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGCATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCAGCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.187

100

0.459