Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   WQ53_RS04345 Genome accession   NZ_CP011144
Coordinates   1001058..1002458 (+) Length   466 a.a.
NCBI ID   WP_052630765.1    Uniprot ID   A0A0E3Z2C7
Organism   Pseudoxanthomonas suwonensis strain J1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 996058..1007458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WQ53_RS04330 (WQ53_04340) sucD 996995..997867 (-) 873 WP_052630759.1 succinate--CoA ligase subunit alpha -
  WQ53_RS04335 (WQ53_04345) sucC 998041..999201 (-) 1161 WP_052630761.1 ADP-forming succinate--CoA ligase subunit beta -
  WQ53_RS04340 (WQ53_04350) - 999407..1001008 (+) 1602 WP_052630763.1 ATP-binding protein -
  WQ53_RS04345 (WQ53_04355) pilR 1001058..1002458 (+) 1401 WP_052630765.1 sigma-54 dependent transcriptional regulator Regulator
  WQ53_RS04350 (WQ53_04360) rsmA 1002808..1003590 (+) 783 WP_052630766.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  WQ53_RS04355 (WQ53_04365) apaG 1004415..1004798 (+) 384 WP_052630768.1 Co2+/Mg2+ efflux protein ApaG -
  WQ53_RS04360 (WQ53_04370) - 1004809..1005660 (+) 852 WP_052630770.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  WQ53_RS04365 (WQ53_04375) - 1005931..1006425 (-) 495 WP_052630772.1 dihydrofolate reductase -
  WQ53_RS04370 (WQ53_04380) - 1006588..1007382 (-) 795 WP_052630774.1 thymidylate synthase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 49718.01 Da        Isoelectric Point: 6.1316

>NTDB_id=142696 WQ53_RS04345 WP_052630765.1 1001058..1002458(+) (pilR) [Pseudoxanthomonas suwonensis strain J1]
MSPGRSALIVDDERDIRELLVLTLGRMGLRVDTAANLAEARELLGGNRYDLCFTDMRLPDGSGIELVGEIARNHPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDINVLRGLVRHALELNNAERPKPPPPPPEQASRLLGDSTAMATLRATIGKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAASGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAAGEVPVDVRILSATHKDLSGLVADGRFRHDLYYRINVIELRVPPLRERTGDLP
QLANAILQRLSAGQGRPAPELTAAAMDALAGYAFPGNVRELENVLERALALADGDSIDAADLHLPQPIARGGAPSEGGGL
PATGQAEAVIDLDPGTGALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=142696 WQ53_RS04345 WP_052630765.1 1001058..1002458(+) (pilR) [Pseudoxanthomonas suwonensis strain J1]
ATGAGCCCCGGCCGCAGTGCACTGATCGTCGACGACGAGCGCGATATCCGCGAACTGCTGGTGCTGACCCTTGGCCGGAT
GGGCCTGCGGGTCGACACCGCAGCCAACCTGGCCGAAGCCCGCGAATTGCTGGGCGGCAACCGCTACGACCTGTGCTTCA
CCGACATGCGGCTGCCCGACGGCAGCGGCATCGAACTGGTCGGCGAGATCGCCCGCAACCATCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCTGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAACGTGCTGCGCGGCCTGGTCCGCCACGCGCTGGAACTGAACAACGCCGAGCGGCCCAAGCCGCCCCCGCCAC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGACTCGACGGCCATGGCCACCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTACATCCTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTGGAC
GAGGTCGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCGC
GGCCGGCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGTCCGGACTGGTGGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGGATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCACCGGCGACCTGCCG
CAGTTGGCCAACGCGATCCTGCAGCGCCTGTCCGCCGGCCAGGGCCGCCCTGCGCCGGAACTGACCGCCGCGGCGATGGA
CGCGCTGGCCGGCTACGCCTTCCCCGGCAACGTGCGCGAGCTGGAGAACGTGCTGGAGCGCGCCCTGGCCCTGGCCGACG
GCGACAGCATCGATGCGGCCGACCTGCACCTGCCGCAGCCGATCGCCCGCGGCGGCGCGCCGTCCGAGGGCGGCGGCCTC
CCGGCGACGGGACAGGCCGAGGCGGTGATCGACCTGGATCCGGGCACCGGCGCCCTGCCCTCGTACATCGAGCAGCTGGA
GCGCGCCGCGATCCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCC
GCGCGCTGCGCTACAAGCTCAAGAAGCTGGGGATGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3Z2C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

99.142

0.624
  pilR Acinetobacter baumannii strain A118

49.356

100

0.494

Multiple sequence alignment