Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LA76x_RS05565 Genome accession   NZ_CP011129
Coordinates   1380974..1382380 (-) Length   468 a.a.
NCBI ID   WP_057916960.1    Uniprot ID   A0A0S2DWT0
Organism   Lysobacter antibioticus strain 76     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375974..1387380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA76x_RS05545 - 1376124..1377296 (-) 1173 WP_057919928.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  LA76x_RS05550 (LA76x_1195) - 1377304..1379232 (-) 1929 WP_057916957.1 hypothetical protein -
  LA76x_RS26190 (LA76x_1196) - 1379288..1379704 (-) 417 WP_057916958.1 pilin -
  LA76x_RS05560 (LA76x_1197) - 1379857..1380276 (-) 420 WP_057916959.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LA76x_RS05565 (LA76x_1199) pilR 1380974..1382380 (-) 1407 WP_057916960.1 sigma-54 dependent transcriptional regulator Regulator
  LA76x_RS05570 (LA76x_1200) - 1382480..1384105 (-) 1626 WP_057916961.1 ATP-binding protein -
  LA76x_RS05575 (LA76x_1201) sucC 1384355..1385521 (+) 1167 WP_057916962.1 ADP-forming succinate--CoA ligase subunit beta -
  LA76x_RS05580 (LA76x_1202) sucD 1385534..1386409 (+) 876 WP_057916963.1 succinate--CoA ligase subunit alpha -
  LA76x_RS05585 (LA76x_1203) - 1386543..1386833 (+) 291 WP_057916964.1 DUF1778 domain-containing protein -
  LA76x_RS05590 (LA76x_1204) - 1386830..1387126 (+) 297 WP_057916965.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 50773.21 Da        Isoelectric Point: 6.7667

>NTDB_id=142594 LA76x_RS05565 WP_057916960.1 1380974..1382380(-) (pilR) [Lysobacter antibioticus strain 76]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNRYDLCLTDMRLPDGSGMDLVAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHVDKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVAEGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILHRLAGSQGRPVPRLGEDAQEALRAYGFPGNVRELENILERALALAEGEVLNASDLRLPRLATQAPLNELQNAGAAPQ
QAAGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=142594 LA76x_RS05565 WP_057916960.1 1380974..1382380(-) (pilR) [Lysobacter antibioticus strain 76]
ATGGCAGAAACTCGTAGTGCATTGGTGGTCGATGACGAGCGCGATATTCGCGAGCTCCTCGTCATGACCTTGGGCCGCAT
GGGCCTGCGTTGCGACACCGCATCGGGCCTCGGCGAGGCGCGCAGCCAACTGCTGCGCAATCGTTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAATACCCCAATACCCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCGGT
CGACCTGGCGGTGCTGCGCGATCTCGTGCGCCACGCGCTCGAACTCAACGACACCCGCCGCAGCGCCAGCGAGGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCATCGGCAAGGTCGCCCGCAGCCAGGCCCCG
GTGTATATCGCCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCATTCCGAAGGCGGCCGCGCCGACGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCCCACGTCGACAAGCCGGGCCTGTTCCAGGCCGCTGACGGCGGCACCTTGTTCCTGGACGAAGTCGCCGAG
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCCATTCGTCCGGTCGGCGCCCAGGCCGAGCT
CGTCGTCGACGTGCGCATTCTGTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGAAGGCCGCTTCCGCCAGGACT
TGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGTTGCGCGAACGCCTCGACGACCTGCCCGGCCTGGCCGCG
AAGATCCTGCACCGCCTCGCCGGCAGCCAGGGCCGTCCGGTGCCGCGCCTCGGCGAGGACGCCCAGGAGGCGCTGCGCGC
CTACGGCTTCCCGGGCAACGTGCGCGAGCTCGAGAACATTCTCGAACGCGCGCTCGCATTGGCCGAAGGCGAAGTCCTCA
ACGCCAGCGACCTGCGCCTGCCGCGCCTGGCCACCCAGGCCCCTTTGAACGAACTGCAGAACGCAGGCGCAGCGCCGCAG
CAAGCGGCCGGCGCCGTCGACCCGCGCACCCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCTTCTTATATAGAAGA
GATCGAGCGCGCCGCGATCCAGCAGGCCCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCGGCCGCACTCGGCATCA
CCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2DWT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.796

99.359

0.624
  pilR Acinetobacter baumannii strain A118

48.847

100

0.498

Multiple sequence alignment