Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC18_RS14770 Genome accession   NZ_CP013826
Coordinates   3052586..3053260 (-) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain FORC_018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3047586..3058260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC18_RS14735 (FORC18_2709) - 3047960..3048748 (+) 789 WP_005496822.1 glycosyltransferase family 2 protein -
  FORC18_RS14740 (FORC18_2710) - 3048797..3049732 (-) 936 WP_025591056.1 glycosyl transferase family 90 -
  FORC18_RS14745 (FORC18_2711) coaD 3049719..3050201 (-) 483 WP_005462497.1 pantetheine-phosphate adenylyltransferase -
  FORC18_RS14750 (FORC18_2712) mutM 3050298..3051107 (-) 810 WP_005489581.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC18_RS14755 (FORC18_2713) - 3051210..3051686 (-) 477 WP_053047773.1 hypothetical protein -
  FORC18_RS14760 (FORC18_2714) rpmG 3051862..3052032 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  FORC18_RS14765 (FORC18_2715) rpmB 3052046..3052282 (-) 237 WP_005467944.1 50S ribosomal protein L28 -
  FORC18_RS14770 (FORC18_2716) radC 3052586..3053260 (-) 675 WP_005482037.1 RadC family protein Machinery gene
  FORC18_RS14775 (FORC18_2717) - 3053374..3055047 (-) 1674 WP_053047774.1 methyl-accepting chemotaxis protein -
  FORC18_RS14780 (FORC18_2718) coaBC 3055232..3056431 (+) 1200 WP_053047775.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC18_RS14785 (FORC18_2719) slmA 3056592..3057182 (+) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  FORC18_RS14790 (FORC18_2720) - 3057188..3058138 (+) 951 WP_005496814.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=142541 FORC18_RS14770 WP_005482037.1 3052586..3053260(-) (radC) [Vibrio parahaemolyticus strain FORC_018]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=142541 FORC18_RS14770 WP_005482037.1 3052586..3053260(-) (radC) [Vibrio parahaemolyticus strain FORC_018]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTCCTCCGTACGGGTACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGCTGTTCTCTGCTTCAGAACAAGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTGTATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCTGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTCGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGTATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384