Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AS200_RS22465 Genome accession   NZ_CP013743
Coordinates   5038212..5038886 (-) Length   224 a.a.
NCBI ID   WP_058924134.1    Uniprot ID   A0ABT5G2Y3
Organism   Streptomyces sp. CdTB01     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5033212..5043886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS200_RS22450 (AS200_22450) - 5034816..5036021 (-) 1206 WP_058924131.1 cytochrome P450 -
  AS200_RS22455 (AS200_22455) vraR 5036071..5036736 (-) 666 WP_058924132.1 response regulator transcription factor Regulator
  AS200_RS22460 (AS200_22460) - 5036733..5038076 (-) 1344 WP_239015616.1 histidine kinase -
  AS200_RS22465 (AS200_22465) vraR 5038212..5038886 (-) 675 WP_058924134.1 response regulator transcription factor Regulator
  AS200_RS22470 (AS200_22470) - 5038883..5040244 (-) 1362 WP_239015234.1 histidine kinase -
  AS200_RS22475 (AS200_22475) - 5040255..5041487 (-) 1233 WP_058924136.1 acyltransferase -
  AS200_RS22480 (AS200_22480) - 5041480..5042559 (-) 1080 WP_079078043.1 alpha/beta hydrolase -
  AS200_RS22485 (AS200_22485) - 5042790..5043689 (-) 900 WP_058924137.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24190.98 Da        Isoelectric Point: 4.9728

>NTDB_id=142422 AS200_RS22465 WP_058924134.1 5038212..5038886(-) (vraR) [Streptomyces sp. CdTB01]
MTSSPIRVLIADDQQMVRQGFTVLLNTQPDIDVVGQAVDGADAVAKVAELAPDVVLMDIRMPELNGIEATRRIAVELPHI
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADKLAEAVRVVAAGDALLAPGITRRLIAEFSRLGDRPRAPLKVRVGDLT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=142422 AS200_RS22465 WP_058924134.1 5038212..5038886(-) (vraR) [Streptomyces sp. CdTB01]
ATGACGAGCAGCCCGATCCGCGTACTGATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGTGCTGCTCAACAC
CCAGCCCGACATCGACGTCGTCGGGCAGGCGGTGGACGGCGCGGACGCCGTCGCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTCCTGATGGACATCCGCATGCCCGAGCTGAACGGCATCGAGGCCACCCGCCGCATCGCCGTCGAGCTGCCGCACATC
AAGGTGCTGGTGCTCACCACGTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGGGCGGGCGCGTCGGGGTTCCTGCT
GAAGGACGCCTCGGCGGACAAGCTGGCCGAGGCGGTCCGCGTGGTGGCGGCCGGCGACGCGCTGCTCGCGCCCGGCATCA
CCCGGCGGCTGATCGCCGAGTTCTCCCGCCTGGGCGACCGGCCCCGGGCCCCGCTGAAGGTGCGCGTAGGCGATCTGACC
GAGCGCGAGACGGAGGTCCTGGCGCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGAGCGGCTGGTCGTCGCCGA
GCAGACCGTGAAGACCCATGTGGGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGGACGCAGGCGGCGGTGTTCGCGT
ACGAGTCGGGACTGGTCAGGCCGTCCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.581

95.982

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

42.358

100

0.433

Multiple sequence alignment