Detailed information NTG0142326

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PCL1606_RS04630
• Genome accession: NZ_CP011110
• Coordinates: 978140..979462 (-)
• Length: 440 a.a.
• NCBI ID: WP_045881194.1
• Uniprot ID: A0A0D5XTJ9
• Organism: Pseudomonas chlororaphis strain PCL1606
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 973140..984462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCL1606_RS04615 (PCL1606_09480)	-	973498..976575 (+)	3078	WP_045881191.1	pilus assembly protein	-
PCL1606_RS04620 (PCL1606_09490)	-	976589..976990 (+)	402	WP_045881192.1	type IV pilin protein	-
PCL1606_RS04625 (PCL1606_09500)	thiO	977043..978143 (+)	1101	WP_045881193.1	glycine oxidase ThiO	-
PCL1606_RS04630 (PCL1606_09510)	pilR	978140..979462 (-)	1323	WP_045881194.1	sigma-54-dependent transcriptional regulator	Regulator
PCL1606_RS04635	-	979747..979980 (-)	234	WP_045881195.1	PP0621 family protein	-
PCL1606_RS04640 (PCL1606_09530)	-	980113..981135 (-)	1023	WP_044465136.1	outer membrane protein assembly factor BamD	-
PCL1606_RS04645 (PCL1606_09540)	rluD	981287..982249 (+)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PCL1606_RS04650 (PCL1606_09550)	pgeF	982246..982971 (+)	726	WP_045881196.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 440 a.a.
• Molecular weight: 48826.16 Da
• Isoelectric Point: 9.2203

>NTDB_id=142326 PCL1606_RS04630 WP_045881194.1 978140..979462(-) (pilR) [Pseudomonas chlororaphis strain PCL1606]
MGPRQKVLIVDDDPGTREYLEISLGRMRRHTRSVRTLGEARRCLEREGFDLCLSDLHLPDGTGLELLEHIRHQQLPMSLA
ILSTCARQETATQARQAGAIDVLSKPVPLARLHKLLNDIRPETIPFASRTLLGDSAPMQALRGQIDKLAGSRAAIYISGE
SGSGKELVARALHDQGTRASRAFVAVNCGAIPAELMESEFFGHRKGSFSGAVEDHPGLFQAAHGGTLFLDEVADLPLAMQ
VKLLRALQQKAVRRVGGHQEVQVDVRILCATHKPLLAEVQAGRFRQDLYYRLNVIELPVPPLRERRDDIEPLASAILERL
ARDNGQPPARLQAGALLALQGHDFPGNVRELENLLERAHTLCDNRLIERHDLRLASNSAYPAIAPGPGNVIDLEAHLQAI
ERRMLLQALEQTRWNRTAAARRLSLSLRSMRYRLKKLGLD

Nucleotide

• Length: 1323 bp

>NTDB_id=142326 PCL1606_RS04630 WP_045881194.1 978140..979462(-) (pilR) [Pseudomonas chlororaphis strain PCL1606]
ATGGGTCCACGACAGAAAGTCCTGATCGTCGATGACGATCCAGGCACCCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCGGCGCCATACCCGTAGCGTCCGCACCCTGGGCGAAGCCCGGCGGTGCCTGGAGCGTGAAGGTTTCGACCTGTGCCTGA
GCGATCTGCACCTGCCCGACGGTACGGGGCTGGAACTGCTGGAACACATCCGGCACCAGCAATTGCCCATGTCGCTGGCG
ATCCTCAGCACCTGCGCGCGCCAGGAAACCGCTACCCAGGCCCGGCAGGCCGGCGCCATCGACGTTCTGAGCAAACCCGT
GCCCCTGGCCCGCTTGCACAAACTGCTGAACGACATCCGGCCCGAGACGATCCCCTTCGCTAGCCGTACGCTGCTTGGCG
ACTCAGCGCCGATGCAGGCGCTGCGTGGCCAGATCGACAAGTTGGCCGGCAGCCGGGCCGCGATCTACATCAGCGGCGAA
TCCGGAAGCGGCAAAGAACTGGTCGCCCGCGCGCTCCATGACCAGGGCACACGGGCCAGCCGGGCCTTCGTGGCAGTCAA
CTGCGGCGCCATTCCGGCGGAACTGATGGAAAGCGAGTTCTTCGGCCATCGCAAAGGCAGCTTCAGTGGCGCCGTCGAAG
ACCACCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTCGACGAGGTAGCCGACCTGCCGCTGGCGATGCAG
GTCAAACTGCTGCGCGCGCTGCAACAGAAGGCGGTGCGCCGCGTCGGCGGACACCAGGAGGTCCAGGTCGATGTGCGCAT
TCTCTGCGCCACCCACAAGCCGCTGCTGGCAGAAGTACAGGCCGGGCGCTTTCGCCAGGACCTCTATTACCGCCTGAACG
TGATCGAGCTGCCCGTCCCGCCTTTACGGGAGCGCCGGGACGATATCGAACCGCTGGCCAGCGCCATCCTCGAACGCCTG
GCACGCGACAATGGCCAGCCACCGGCACGGCTCCAGGCTGGAGCGCTGCTGGCTCTCCAGGGGCATGACTTTCCCGGCAA
CGTGCGCGAACTGGAAAACCTGCTCGAACGGGCACACACCCTGTGCGACAACCGGCTGATCGAACGCCACGACCTGCGCC
TCGCATCCAATAGCGCATACCCGGCCATCGCGCCCGGGCCGGGGAACGTCATCGATCTTGAAGCGCACCTGCAAGCGATC
GAGCGCCGCATGCTCCTCCAGGCCCTGGAGCAGACCCGCTGGAACCGCACGGCGGCGGCCCGGCGCCTGAGCCTGTCGTT
GCGTTCGATGCGCTATCGGCTGAAGAAACTGGGGCTGGACTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (398-437)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (132-297)

3D structure

• AlphaFold DB: A0A0D5XTJ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.126	100	0.65
pilR	Acinetobacter baumannii strain A118	42.702	100	0.445