Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   bslm_RS17390 Genome accession   NZ_CP011101
Coordinates   3491696..3492418 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus sp. LM 4-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3486696..3497418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bslm_RS17355 (BsLM_3547) fliW 3486835..3487266 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  bslm_RS17360 (BsLM_3548) - 3487287..3487862 (-) 576 WP_003243053.1 DUF6470 family protein -
  bslm_RS17365 (BsLM_3549) flgL 3487909..3488805 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  bslm_RS17370 (BsLM_3550) flgK 3488816..3490339 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  bslm_RS17375 (BsLM_3551) flgN 3490358..3490840 (-) 483 WP_003227999.1 flagellar protein FlgN -
  bslm_RS17380 (BsLM_3552) flgM 3490856..3491122 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  bslm_RS17385 (BsLM_3553) - 3491203..3491622 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  bslm_RS17390 (BsLM_3554) comFC 3491696..3492418 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  bslm_RS17395 (BsLM_3555) comFB 3492382..3492678 (-) 297 WP_003227989.1 late competence protein ComFB -
  bslm_RS17400 (BsLM_3556) comFA 3492738..3494129 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  bslm_RS17405 (BsLM_3557) - 3494235..3495080 (-) 846 WP_003244125.1 DegV family protein -
  bslm_RS17410 (BsLM_3558) degU 3495178..3495867 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  bslm_RS17415 (BsLM_3559) degS 3495950..3497107 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=142219 bslm_RS17390 WP_003227991.1 3491696..3492418(-) (comFC) [Bacillus sp. LM 4-2]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=142219 bslm_RS17390 WP_003227991.1 3491696..3492418(-) (comFC) [Bacillus sp. LM 4-2]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment