Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   bslm_RS11885 Genome accession   NZ_CP011101
Coordinates   2402257..2402604 (-) Length   115 a.a.
NCBI ID   WP_046381178.1    Uniprot ID   A0AA96UMN2
Organism   Bacillus sp. LM 4-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2397257..2407604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bslm_RS11840 (BsLM_2416) sinI 2397781..2397954 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  bslm_RS11845 (BsLM_2417) sinR 2397988..2398323 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  bslm_RS11850 (BsLM_2418) tasA 2398416..2399201 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  bslm_RS11855 (BsLM_2419) - 2399265..2399837 (-) 573 WP_003230181.1 signal peptidase I -
  bslm_RS11860 (BsLM_2420) tapA 2399821..2400582 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  bslm_RS11865 (BsLM_2421) - 2400854..2401180 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  bslm_RS11870 (BsLM_2422) - 2401222..2401401 (-) 180 WP_029726723.1 YqzE family protein -
  bslm_RS11875 (BsLM_2423) comGG 2401473..2401847 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  bslm_RS11880 (BsLM_2424) comGF 2401848..2402231 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  bslm_RS11885 (BsLM_2425) comGE 2402257..2402604 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  bslm_RS11890 (BsLM_2426) comGD 2402588..2403019 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  bslm_RS11895 (BsLM_2427) comGC 2403009..2403305 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  bslm_RS11900 (BsLM_2428) comGB 2403319..2404356 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  bslm_RS11905 (BsLM_2429) comGA 2404343..2405413 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  bslm_RS11910 (BsLM_2431) - 2405625..2405822 (-) 198 WP_014480259.1 CBS domain-containing protein -
  bslm_RS11915 (BsLM_2432) corA 2405824..2406777 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 13299.32 Da        Isoelectric Point: 5.1901

>NTDB_id=142196 bslm_RS11885 WP_046381178.1 2402257..2402604(-) (comGE) [Bacillus sp. LM 4-2]
MWRENKGFSTIETMSALSLWLFVLLTVVPLWDKLIADEKMAESREIGYQMMNESISKYVMSGEGAASKTITKNNHIYAMK
WEEEGEYQNVCIKATAYKEKSYCLSILQTEWLHAS

Nucleotide


Download         Length: 348 bp        

>NTDB_id=142196 bslm_RS11885 WP_046381178.1 2402257..2402604(-) (comGE) [Bacillus sp. LM 4-2]
ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCTAAGCCTGTGGCTGTTTGTGCTGCTGACAGT
CGTCCCCTTGTGGGACAAGCTAATAGCTGATGAAAAAATGGCGGAATCACGAGAAATCGGCTATCAGATGATGAATGAGA
GCATTAGCAAATATGTCATGAGTGGTGAAGGAGCCGCGTCAAAAACAATTACAAAGAACAATCATATCTATGCAATGAAG
TGGGAGGAGGAGGGCGAATATCAAAACGTATGTATCAAAGCCACAGCTTATAAAGAGAAATCATATTGCCTCAGCATCCT
GCAGACAGAATGGCTACACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

97.391

100

0.974

Multiple sequence alignment