Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   AVM03_RS10115 Genome accession   NZ_CP013727
Coordinates   2147449..2149764 (-) Length   771 a.a.
NCBI ID   WP_058906347.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2142449..2154764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS10105 (AVM03_10095) cysI 2143723..2145438 (-) 1716 WP_003151735.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  AVM03_RS10110 (AVM03_10100) - 2145466..2147274 (-) 1809 WP_058906346.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  AVM03_RS10115 (AVM03_10105) helD 2147449..2149764 (-) 2316 WP_058906347.1 RNA polymerase recycling motor HelD Machinery gene
  AVM03_RS10120 (AVM03_10110) - 2149937..2150545 (-) 609 WP_003151732.1 trimeric intracellular cation channel family protein -
  AVM03_RS10125 (AVM03_10115) - 2150768..2151568 (+) 801 WP_058906348.1 zinc-dependent metalloprotease -
  AVM03_RS10130 (AVM03_10120) - 2151602..2152021 (-) 420 WP_014305812.1 disulfide oxidoreductase -
  AVM03_RS10135 (AVM03_10125) - 2152011..2152682 (-) 672 WP_058906349.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87789.68 Da        Isoelectric Point: 6.1221

>NTDB_id=142192 AVM03_RS10115 WP_058906347.1 2147449..2149764(-) (helD) [Bacillus amyloliquefaciens strain MBE1283]
MAKRDKEWKEEQERINFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKHLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNKDALSVRLAAIAYKASSAFQAMIDRYAGSLSVSGLICKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWESIGALTGNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGSSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTENARREQLADTIRELGQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAAQYNSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=142192 AVM03_RS10115 WP_058906347.1 2147449..2149764(-) (helD) [Bacillus amyloliquefaciens strain MBE1283]
ATGGCAAAACGTGATAAAGAATGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAATTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATACTCCCCGGGAAAAGCCCGCTATGAAGTTCCGGAAGAA
ACGATAGAGGGAGACATCACACTGAAGCGGCAGTTCATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGACAGCATATGAAAAATATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGTGATGAAAAAAGCAAACATCTCATCGTTCAGGGAGCTGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTCAACAGTTATGTGTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGTCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATAAGGACGCACTTTCCGTAAGGCTCGCAGCCATTGCTTACAAAGCGTCATCAGCTTTTCAGGCCATGATTGACCG
CTATGCCGGGTCGCTTTCGGTCTCCGGCCTGATATGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAGC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GCCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTTGAC
CGGAAACGCATTTGCAGAACGGTCGCTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAGGAA
AGAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATATTCAA
AGCATCTTCCCGGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCATACCATTACGGGCTCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAATGCGCGGCGGGAACAATTGGCGGATACAATCCGGGAGCTCGGACAAAAAGGCTGGGAGACGGT
CGCTGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGGCGGTCAGCGCCGAGAGCGGTGTCCGTTTAATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTGTGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGATGCCTCTGCTGCCCAGTACAATAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATTTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

UvrD-like helicase C-terminal domain (UvrD_C)

(601-686)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.883

99.87

0.668

Multiple sequence alignment