Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AVM03_RS09905 Genome accession   NZ_CP013727
Coordinates   2104936..2105568 (-) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2099936..2110568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS09885 (AVM03_09875) - 2100965..2101150 (-) 186 WP_003151806.1 YvzF family protein -
  AVM03_RS09890 (AVM03_09880) - 2101267..2102709 (+) 1443 WP_014305783.1 spore germination protein -
  AVM03_RS09895 (AVM03_09885) - 2102684..2103784 (+) 1101 WP_058906342.1 spore germination protein -
  AVM03_RS09900 (AVM03_09890) - 2103781..2104893 (+) 1113 WP_003151800.1 Ger(x)C family spore germination protein -
  AVM03_RS09905 (AVM03_09895) vraR 2104936..2105568 (-) 633 WP_003151798.1 response regulator transcription factor Regulator
  AVM03_RS09910 (AVM03_09900) liaS 2105546..2106628 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  AVM03_RS09915 (AVM03_09905) liaF 2106625..2107356 (-) 732 WP_025853872.1 cell wall-active antibiotics response protein LiaF -
  AVM03_RS09920 (AVM03_09910) - 2107383..2108252 (-) 870 WP_025853871.1 DUF4097 domain-containing protein -
  AVM03_RS09925 (AVM03_09915) liaH 2108358..2109035 (-) 678 WP_003151791.1 stress responsive protein LiaH -
  AVM03_RS09930 (AVM03_09920) - 2109049..2109429 (-) 381 WP_003151789.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=142189 AVM03_RS09905 WP_003151798.1 2104936..2105568(-) (vraR) [Bacillus amyloliquefaciens strain MBE1283]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=142189 AVM03_RS09905 WP_003151798.1 2104936..2105568(-) (vraR) [Bacillus amyloliquefaciens strain MBE1283]
GTGATTCGAGTGTTACTGATTGATGATCATGAGATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTGATTTTAATGG
ACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGAAACTCAATGATCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGTGAACCGAAGCTTGAGTCGAAAGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACGAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGTTGTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39

Multiple sequence alignment