Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   bslm_RS02120 Genome accession   NZ_CP011101
Coordinates   424783..425733 (+) Length   316 a.a.
NCBI ID   WP_038428356.1    Uniprot ID   A0AA96ZV99
Organism   Bacillus sp. LM 4-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419783..430733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bslm_RS02095 (BsLM_0395) rapC 421242..422390 (+) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator
  bslm_RS02100 (BsLM_0396) phrC 422374..422496 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  bslm_RS20320 (BsLM_0397) - 422596..422685 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  bslm_RS20325 (BsLM_0398) - 422767..422880 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  bslm_RS02115 (BsLM_0399) - 423034..424398 (-) 1365 WP_038428355.1 aspartate kinase -
  bslm_RS02120 (BsLM_0401) ceuB 424783..425733 (+) 951 WP_038428356.1 petrobactin ABC transporter permease YclN Machinery gene
  bslm_RS02125 (BsLM_0402) yclO 425726..426673 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  bslm_RS02130 (BsLM_0403) yclP 426667..427425 (+) 759 WP_046380785.1 petrobactin ABC transporter ATP-binding protein YclP -
  bslm_RS02135 (BsLM_0404) yclQ 427447..428400 (+) 954 WP_038428358.1 petrobactin ABC transporter substrate-binding protein YclQ -
  bslm_RS02140 (BsLM_0405) - 428447..429865 (-) 1419 WP_014478836.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=142158 bslm_RS02120 WP_038428356.1 424783..425733(+) (ceuB) [Bacillus sp. LM 4-2]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYLYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=142158 bslm_RS02120 WP_038428356.1 424783..425733(+) (ceuB) [Bacillus sp. LM 4-2]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTGATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATTTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGAGCAGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment