Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   AVM03_RS03430 Genome accession   NZ_CP013727
Coordinates   771383..772003 (-) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 766383..777003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS03400 (AVM03_03395) - 767388..767822 (+) 435 WP_014305062.1 dUTP diphosphatase -
  AVM03_RS03405 (AVM03_03400) - 768099..768920 (+) 822 WP_025851095.1 poly-gamma-glutamate hydrolase family protein -
  AVM03_RS20230 - 769029..769178 (+) 150 WP_003154013.1 hypothetical protein -
  AVM03_RS03410 (AVM03_03405) - 769165..769995 (+) 831 WP_003154011.1 prohibitin family protein -
  AVM03_RS03415 (AVM03_03410) - 770023..770472 (-) 450 WP_015388182.1 YndM family protein -
  AVM03_RS03420 (AVM03_03415) - 770614..771042 (+) 429 WP_003154006.1 hypothetical protein -
  AVM03_RS03430 (AVM03_03425) dinR/lexA 771383..772003 (-) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  AVM03_RS03435 (AVM03_03430) yneA 772160..772471 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  AVM03_RS03440 (AVM03_03435) - 772487..773137 (+) 651 WP_003153998.1 YneB family resolvase-like protein -
  AVM03_RS03445 (AVM03_03440) - 773206..773439 (+) 234 WP_014305066.1 DUF896 domain-containing protein -
  AVM03_RS03450 (AVM03_03445) recP/tkt 773606..775609 (+) 2004 WP_058906052.1 transketolase Machinery gene
  AVM03_RS03455 (AVM03_03450) sirA 775761..776207 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  AVM03_RS03460 (AVM03_03455) - 776293..776511 (+) 219 WP_003153994.1 YneF family protein -
  AVM03_RS03465 (AVM03_03460) - 776585..776758 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=142143 AVM03_RS03430 WP_003154004.1 771383..772003(-) (dinR/lexA) [Bacillus amyloliquefaciens strain MBE1283]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=142143 AVM03_RS03430 WP_003154004.1 771383..772003(-) (dinR/lexA) [Bacillus amyloliquefaciens strain MBE1283]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACGAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCATATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATTGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTGATCGGCGTATTCAGAGCCGTCCATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927