Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AVM03_RS00745 Genome accession   NZ_CP013727
Coordinates   137404..138540 (+) Length   378 a.a.
NCBI ID   WP_088005367.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 132404..143540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS00715 (AVM03_00715) scnR 133064..133735 (+) 672 WP_003154900.1 response regulator transcription factor Regulator
  AVM03_RS00720 (AVM03_00720) - 133732..135090 (+) 1359 WP_003154898.1 HAMP domain-containing sensor histidine kinase -
  AVM03_RS00725 (AVM03_00725) - 135210..135392 (+) 183 Protein_145 ATP-binding cassette domain-containing protein -
  AVM03_RS00730 (AVM03_00730) - 135552..135743 (+) 192 WP_014304836.1 hypothetical protein -
  AVM03_RS00735 (AVM03_00735) - 135819..136583 (-) 765 WP_015388360.1 sulfite exporter TauE/SafE family protein -
  AVM03_RS00740 (AVM03_00740) - 136732..137199 (-) 468 WP_014304838.1 DinB family protein -
  AVM03_RS00745 (AVM03_00745) rapC 137404..138540 (+) 1137 WP_088005367.1 Rap family tetratricopeptide repeat protein Regulator
  AVM03_RS19960 (AVM03_00750) - 138530..138664 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  AVM03_RS00755 (AVM03_00755) - 138807..139754 (+) 948 WP_025851834.1 N-acetylmuramoyl-L-alanine amidase -
  AVM03_RS00760 (AVM03_00760) - 139792..140169 (-) 378 WP_003154878.1 PH domain-containing protein -
  AVM03_RS00765 (AVM03_00765) - 140279..140884 (+) 606 WP_032858666.1 poly-gamma-glutamate hydrolase family protein -
  AVM03_RS20205 - 140874..141023 (+) 150 WP_162918038.1 hypothetical protein -
  AVM03_RS00770 (AVM03_00770) - 141039..141629 (-) 591 WP_003154873.1 ImmA/IrrE family metallo-endopeptidase -
  AVM03_RS00775 (AVM03_00775) xre 141778..142116 (-) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  AVM03_RS00780 (AVM03_00780) - 142308..142487 (+) 180 WP_003154869.1 hypothetical protein -
  AVM03_RS00785 (AVM03_00785) - 142477..143304 (+) 828 WP_025851827.1 FaeA/PapI family transcriptional regulator -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45092.33 Da        Isoelectric Point: 4.9175

>NTDB_id=142118 AVM03_RS00745 WP_088005367.1 137404..138540(+) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
RTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=142118 AVM03_RS00745 WP_088005367.1 137404..138540(+) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATTGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGCGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATATCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTCAATCTGTTCCAATTTTTGCATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CGCACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426

Multiple sequence alignment