Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AVM03_RS00715 Genome accession   NZ_CP013727
Coordinates   133064..133735 (+) Length   223 a.a.
NCBI ID   WP_003154900.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 128064..138735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS00700 (AVM03_00700) - 128871..129869 (+) 999 WP_003154904.1 LacI family DNA-binding transcriptional regulator -
  AVM03_RS00705 (AVM03_00705) - 129945..131390 (+) 1446 WP_058905952.1 tagaturonate reductase -
  AVM03_RS00710 (AVM03_00710) - 131387..132880 (+) 1494 WP_058905953.1 UxaA family hydrolase -
  AVM03_RS00715 (AVM03_00715) scnR 133064..133735 (+) 672 WP_003154900.1 response regulator transcription factor Regulator
  AVM03_RS00720 (AVM03_00720) - 133732..135090 (+) 1359 WP_003154898.1 HAMP domain-containing sensor histidine kinase -
  AVM03_RS00725 (AVM03_00725) - 135210..135392 (+) 183 Protein_145 ATP-binding cassette domain-containing protein -
  AVM03_RS00730 (AVM03_00730) - 135552..135743 (+) 192 WP_014304836.1 hypothetical protein -
  AVM03_RS00735 (AVM03_00735) - 135819..136583 (-) 765 WP_015388360.1 sulfite exporter TauE/SafE family protein -
  AVM03_RS00740 (AVM03_00740) - 136732..137199 (-) 468 WP_014304838.1 DinB family protein -
  AVM03_RS00745 (AVM03_00745) rapC 137404..138540 (+) 1137 WP_088005367.1 Rap family tetratricopeptide repeat protein Regulator
  AVM03_RS19960 (AVM03_00750) - 138530..138664 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26422.68 Da        Isoelectric Point: 6.5038

>NTDB_id=142117 AVM03_RS00715 WP_003154900.1 133064..133735(+) (scnR) [Bacillus amyloliquefaciens strain MBE1283]
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=142117 AVM03_RS00715 WP_003154900.1 133064..133735(+) (scnR) [Bacillus amyloliquefaciens strain MBE1283]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTAAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGAATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363