Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   AU077_RS07940 Genome accession   NZ_CP013688
Coordinates   1590525..1591559 (-) Length   344 a.a.
NCBI ID   WP_014294009.1    Uniprot ID   A0A081JJ83
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1585525..1596559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS07910 (AU077_07910) - 1585577..1586611 (-) 1035 Protein_1617 glycosyltransferase -
  AU077_RS12100 (AU077_07915) - 1586598..1587665 (-) 1068 Protein_1618 glycosyltransferase -
  AU077_RS07920 (AU077_07920) - 1587625..1588696 (-) 1072 Protein_1619 sensor domain-containing diguanylate cyclase -
  AU077_RS07930 (AU077_07930) trmB 1589028..1589666 (-) 639 WP_014294011.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AU077_RS07935 (AU077_07935) ccrZ 1589666..1590460 (-) 795 WP_014294010.1 cell cycle regulator CcrZ -
  AU077_RS07940 (AU077_07940) pptB 1590525..1591559 (-) 1035 WP_014294009.1 ABC transporter permease Regulator
  AU077_RS07945 (AU077_07945) pptA 1591561..1592286 (-) 726 WP_014294008.1 ABC transporter ATP-binding protein Regulator
  AU077_RS07950 (AU077_07950) - 1592350..1592769 (+) 420 WP_039670484.1 HIT family protein -
  AU077_RS07955 (AU077_07955) - 1592766..1593068 (+) 303 WP_014294006.1 hypothetical protein -
  AU077_RS07960 (AU077_07960) brpA 1593151..1594293 (-) 1143 WP_014294005.1 biofilm formation/cell division transcriptional regulator BrpA -
  AU077_RS07965 (AU077_07965) - 1594304..1594816 (-) 513 WP_058621884.1 GNAT family N-acetyltransferase -
  AU077_RS07970 (AU077_07970) tsaE 1594809..1595252 (-) 444 WP_014294003.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39756.81 Da        Isoelectric Point: 10.6281

>NTDB_id=141972 AU077_RS07940 WP_014294009.1 1590525..1591559(-) (pptB) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MKEVFQKRRSAFLGQSLKYLRYVFNDHFVLVLVFLTGFLMVQYSQLLRQFPSQTVVVDVILVLVILVLLSLGKIATYLEA
PDKLFYLPKEVEILQWLSQARRRAFVIWTIVQTVILVLLAPIFFKLGFSMVTFGILLLALAAVKWLVMKEKSKVFFSQGK
FSWDAAISYEAKRRQGVLKFFSLFTTVKGISASVKRRSYLDGLLGLVKKTHAKTWSNLYLRAFLRSSDYFALTLRLLALS
LLALIFISNRLVAVSLALVFNYLLLFQLLTLSQHFDYQYLTNLYPISEKQKAANLKTFLKKLSYLLGFLELLLTFSWQAA
SLLVLVTVIITEWYLPYKINKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=141972 AU077_RS07940 WP_014294009.1 1590525..1591559(-) (pptB) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGAAAGAAGTTTTTCAAAAGCGCCGTAGTGCTTTTTTAGGGCAAAGCTTAAAGTATCTTCGTTATGTCTTTAATGACCA
TTTTGTGCTAGTCTTGGTTTTCTTAACAGGTTTTCTGATGGTTCAATACAGCCAGCTGTTACGTCAGTTTCCAAGCCAGA
CAGTCGTTGTTGACGTGATTTTGGTCTTGGTTATCCTTGTTTTGCTTAGCCTTGGGAAGATTGCGACTTATTTGGAAGCA
CCTGATAAATTGTTCTATTTGCCAAAAGAAGTTGAGATTTTGCAATGGCTATCACAGGCAAGACGTCGTGCTTTTGTGAT
TTGGACGATTGTGCAAACAGTAATTCTTGTCTTATTAGCTCCTATCTTCTTTAAACTAGGTTTTTCAATGGTTACCTTTG
GCATTTTATTGCTTGCTTTAGCGGCTGTGAAATGGCTTGTAATGAAAGAAAAAAGCAAGGTCTTCTTTTCTCAAGGAAAA
TTTTCATGGGATGCTGCCATTTCTTATGAAGCAAAACGTCGTCAAGGAGTGCTTAAATTCTTTTCACTTTTCACAACGGT
TAAGGGAATTTCAGCTAGTGTGAAACGTCGTTCGTATTTGGATGGTCTGCTTGGTTTGGTCAAAAAAACACATGCCAAAA
CATGGTCAAATTTATACCTACGTGCGTTTTTACGGAGTTCAGATTATTTTGCTTTAACCTTGCGATTACTCGCATTGAGT
TTGCTTGCGCTTATCTTTATTTCCAATCGCTTGGTAGCAGTTAGCTTGGCTTTGGTCTTTAATTATTTATTGCTTTTTCA
ATTATTAACCCTATCTCAACATTTTGATTATCAATATTTGACCAATCTTTATCCAATTTCTGAAAAGCAAAAGGCGGCTA
ATTTAAAGACATTTTTGAAAAAATTATCGTATTTACTGGGCTTTTTGGAGTTATTATTAACGTTTTCTTGGCAAGCAGCG
AGCTTGTTGGTTTTGGTAACGGTTATTATTACAGAATGGTATCTTCCTTACAAAATCAATAAGATGATTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A081JJ83

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

45.64

100

0.456

  pptB Streptococcus salivarius strain HSISS4

45.64

100

0.456


Multiple sequence alignment