Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AU077_RS07785 Genome accession   NZ_CP013688
Coordinates   1559635..1561620 (-) Length   661 a.a.
NCBI ID   WP_014294033.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1554635..1566620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS07760 (AU077_07760) - 1555128..1556753 (-) 1626 WP_058621878.1 hypothetical protein -
  AU077_RS07765 (AU077_07765) - 1556758..1557492 (-) 735 WP_014294035.1 ABC transporter ATP-binding protein -
  AU077_RS07770 (AU077_07770) - 1557508..1557810 (-) 303 WP_014294034.1 bacteriocin immunity protein -
  AU077_RS10840 - 1557995..1559565 (+) 1571 WP_099412448.1 IS3 family transposase -
  AU077_RS07785 (AU077_07785) recP/tkt 1559635..1561620 (-) 1986 WP_014294033.1 transketolase Machinery gene
  AU077_RS11700 (AU077_07790) - 1561710..1561966 (-) 257 Protein_1590 transaldolase family protein -
  AU077_RS11705 - 1562168..1562293 (-) 126 Protein_1591 hypothetical protein -
  AU077_RS11710 - 1562278..1562664 (-) 387 WP_230937538.1 helix-turn-helix domain-containing protein -
  AU077_RS11715 - 1562806..1562946 (-) 141 WP_014294030.1 HTH domain-containing protein -
  AU077_RS07800 (AU077_07800) - 1563085..1563342 (-) 258 WP_014294029.1 DUF896 family protein -
  AU077_RS07805 (AU077_07805) glyS 1563521..1565560 (-) 2040 WP_058621879.1 glycine--tRNA ligase subunit beta -
  AU077_RS07810 (AU077_07810) glyQ 1565560..1566477 (-) 918 WP_058621880.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71225.13 Da        Isoelectric Point: 4.8178

>NTDB_id=141971 AU077_RS07785 WP_014294033.1 1559635..1561620(-) (recP/tkt) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MTFDAIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRSWSNRDRFVLSAGHGSALLYSLLH
LSGYNVSIDDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFNIVDHYTYVLHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGSTSKAFTEDIKGKFEAYGWQHILVEDGNDLEAIAKAIEEAKAETE
KPSIIEVKTIIGFGAEKQGTSAVHGAPLGVDGIAYAKKSYGWEYPEFTVPEEVAKRFEVGIKFRGEAAENAWDAKFREYE
AAYPELAAEYKAAFANKPVDVTLEDFEIGTSLASRSSSQQAIQQISAQVPSFWGGSADLSASNNTMVKVESDFQPDNYSG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQQLPTVYVMTHDSIAVGEDGPTHEPVEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETDRPTMLILTRQNLPVLEGTKELAAEGVNKGAYILSEAKGDLDGILIATGSEV
KLALDTQAALEAKGVHVRVVSMPAQNIFDEQDAAYKESILPANVTKRLAIEAGSSFGWGKYVGLEGKTLTIDTWGASAPG
NKIFEEYGFTVDNAVNLYESL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=141971 AU077_RS07785 WP_014294033.1 1559635..1561620(-) (recP/tkt) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGACATTTGATGCTATTGATCAGTTGGCAGTCAATACTGTCCGTACGCTCTCAATTGATGCCATTCAGGCAGCTAATTC
AGGTCACCCTGGTCTTCCAATGGGAGCTGCACCTATGGCTTATGTTCTTTGGAATCATGTAATGAATGTTAATCCGAAGA
CCAGCCGCTCTTGGTCTAACCGAGATCGTTTTGTACTATCTGCAGGACATGGTTCTGCCCTTTTATACAGCCTTCTTCAT
CTATCAGGTTACAATGTTAGCATTGATGATTTGAAGAATTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAAGT
CAATCATACAGACGGTGTTGAAGCTACAACTGGACCTCTTGGCCAAGGGATTGCCAATGCTGTTGGTATGGCAATGGCAG
AAGCTCACTTAGCAGCTAAATTTAACAAACCAGGATTTAATATCGTTGACCACTACACTTATGTTTTGCATGGTGACGGT
TGCTTGATGGAAGGTGTCAGTCAAGAAGCTGCCAGCCTTGCTGGACATCTTAAACTTGGCAAATTAGTCCTTCTTTACGA
TTCAAACGACATTTCACTTGACGGTTCAACATCAAAAGCTTTCACAGAAGATATCAAAGGTAAATTTGAAGCTTACGGTT
GGCAACACATTTTGGTTGAAGATGGTAATGACCTCGAAGCGATTGCTAAAGCTATCGAAGAAGCAAAAGCTGAAACTGAA
AAACCATCTATTATCGAAGTGAAAACAATCATTGGTTTCGGTGCTGAAAAACAAGGAACATCAGCTGTTCACGGTGCCCC
TCTTGGCGTTGATGGCATTGCTTACGCTAAAAAATCTTACGGTTGGGAATATCCAGAATTCACAGTACCAGAAGAGGTGG
CTAAACGCTTTGAAGTTGGTATCAAATTCCGTGGTGAAGCTGCTGAAAATGCATGGGATGCTAAATTCCGTGAATACGAA
GCTGCTTATCCAGAATTAGCCGCTGAATACAAAGCAGCATTCGCTAACAAACCAGTTGACGTGACACTTGAAGATTTCGA
AATCGGTACAAGCCTTGCTAGCCGTTCATCAAGTCAACAAGCTATCCAACAAATCTCAGCACAAGTGCCATCATTCTGGG
GTGGTTCAGCTGACCTTTCTGCATCAAACAATACAATGGTCAAAGTAGAATCTGATTTCCAACCAGATAACTACTCTGGT
CGTAATATTTGGTTTGGTGTGCGTGAATTTGCCATGGCAGCTGCCATGAACGGTATTGCTCTTCATGGTGGTACTCGTGT
TTACGGTGGTACATTCTTCGTATTCTCAAACTACCTTCTTCCAGCTGTTCGTATGGCTGCTCTTCAACAATTACCCACGG
TTTATGTCATGACGCATGATTCAATCGCTGTCGGTGAAGACGGACCAACTCACGAACCAGTTGAACAATTGGCTAGCGTT
CGTTCTATGCCTAACCTTAACGTTATCCGTCCTGCTGACGGTAACGAAACAAATGCTGCATGGAAACGTGCTCTTGCTGA
AACTGATCGTCCAACAATGCTCATCTTGACACGTCAAAATCTTCCTGTCCTTGAAGGGACAAAAGAATTGGCAGCAGAAG
GTGTTAATAAAGGTGCTTATATCCTTTCAGAAGCAAAAGGTGACCTTGACGGTATCCTTATTGCAACAGGTTCTGAAGTG
AAGTTGGCGCTTGATACGCAAGCTGCTTTGGAAGCAAAAGGTGTTCATGTTCGTGTGGTTTCAATGCCAGCACAAAACAT
CTTTGACGAACAAGACGCTGCTTATAAAGAAAGCATTCTTCCAGCTAACGTCACAAAACGTTTGGCTATCGAAGCTGGTT
CAAGCTTTGGTTGGGGGAAATACGTTGGTCTCGAAGGTAAAACTCTTACAATCGATACTTGGGGCGCATCTGCACCAGGC
AATAAAATCTTTGAAGAATACGGCTTCACAGTTGATAACGCTGTAAATCTTTACGAATCATTATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.295

99.546

0.57

Multiple sequence alignment