Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AUQ45_RS09245 Genome accession   NZ_CP013672
Coordinates   1844841..1845947 (+) Length   368 a.a.
NCBI ID   WP_014635799.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain AP53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1839841..1850947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUQ45_RS09225 (AUQ45_1848) hasA 1840519..1841778 (+) 1260 WP_063265970.1 hyaluronan synthase HasA -
  AUQ45_RS09230 (AUQ45_1849) hasB 1841814..1843022 (+) 1209 WP_002992300.1 UDP-glucose 6-dehydrogenase HasB -
  AUQ45_RS09235 (AUQ45_1851) hasC 1843204..1844118 (+) 915 WP_002982024.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  AUQ45_RS09240 (AUQ45_1852) yaaA 1844426..1844839 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  AUQ45_RS09245 (AUQ45_1853) recF 1844841..1845947 (+) 1107 WP_014635799.1 DNA replication/repair protein RecF Machinery gene
  AUQ45_RS09250 (AUQ45_1854) - 1846004..1846867 (-) 864 WP_002992310.1 GRP family sugar transporter -
  AUQ45_RS09255 (AUQ45_1855) guaB 1847070..1848551 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  AUQ45_RS09260 (AUQ45_1856) trpS 1848859..1849881 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41808.75 Da        Isoelectric Point: 8.4064

>NTDB_id=141895 AUQ45_RS09245 WP_014635799.1 1844841..1845947(+) (recF) [Streptococcus pyogenes strain AP53]
MWIKELELKHYRNYDHLLVSFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=141895 AUQ45_RS09245 WP_014635799.1 1844841..1845947(+) (recF) [Streptococcus pyogenes strain AP53]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGTCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462