Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VN24_RS10090 Genome accession   NZ_CP011058
Coordinates   2256470..2256997 (-) Length   175 a.a.
NCBI ID   WP_045670308.1    Uniprot ID   A0A0D5NIC7
Organism   Paenibacillus beijingensis strain DSM 24997     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2251470..2261997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN24_RS10060 (VN24_10060) - 2252296..2253372 (-) 1077 WP_045670303.1 mannose-1-phosphate guanylyltransferase -
  VN24_RS10065 (VN24_10065) - 2253458..2254387 (-) 930 WP_045670304.1 GDP-L-fucose synthase family protein -
  VN24_RS10070 (VN24_10070) gmd 2254424..2255446 (-) 1023 WP_045670305.1 GDP-mannose 4,6-dehydratase -
  VN24_RS10080 (VN24_10080) - 2255733..2256089 (+) 357 WP_045673165.1 DUF4870 domain-containing protein -
  VN24_RS10085 (VN24_10085) rpsR 2256169..2256450 (-) 282 WP_045670307.1 30S ribosomal protein S18 -
  VN24_RS10090 (VN24_10090) ssbA 2256470..2256997 (-) 528 WP_045670308.1 single-stranded DNA-binding protein Machinery gene
  VN24_RS10095 (VN24_10095) rpsF 2257031..2257315 (-) 285 WP_045670309.1 30S ribosomal protein S6 -
  VN24_RS10100 (VN24_10100) - 2257587..2257769 (+) 183 WP_045670310.1 YjzC family protein -
  VN24_RS10105 (VN24_10105) - 2258209..2258715 (+) 507 WP_045670311.1 hypothetical protein -
  VN24_RS10115 (VN24_10115) - 2259031..2259273 (-) 243 WP_045670312.1 DUF951 domain-containing protein -
  VN24_RS10120 (VN24_10120) - 2259263..2260141 (-) 879 WP_052702889.1 mechanosensitive ion channel family protein -
  VN24_RS10125 (VN24_10125) - 2260167..2260406 (-) 240 WP_045670313.1 DUF3343 domain-containing protein -
  VN24_RS10130 (VN24_10130) yyaC 2260523..2261113 (+) 591 WP_045670314.1 spore protease YyaC -
  VN24_RS10135 (VN24_10135) - 2261088..2261576 (-) 489 WP_045670315.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18966.71 Da        Isoelectric Point: 4.8537

>NTDB_id=141853 VN24_RS10090 WP_045670308.1 2256470..2256997(-) (ssbA) [Paenibacillus beijingensis strain DSM 24997]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFNSQQGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYDNNEGKRVYVTEVIADNVRFLESPNRDNNGMREEGGSGNYGGGGGTGGSGSGFGGGSSYGGGNRPSGGSRNDNRDPFS
DDGRPIDISEDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=141853 VN24_RS10090 WP_045670308.1 2256470..2256997(-) (ssbA) [Paenibacillus beijingensis strain DSM 24997]
ATGTTGAACCGGGTCATTTTGATTGGCAGGCTAACGAAAGATCCCGAGCTGCGCTACACGCCTTCTGGTGTGGCGGTGAC
GCAGTTTACGCTTGCGGTCGACCGTCCCTTTAACAGCCAGCAAGGCGAAAGGGAAGCCGACTTTATTCCGGTCGTCACGT
GGAGGCAGCTTGCCGAGACGTGCGCCAACTACTTGCGCAAAGGCCGCTTAACGGCGGTTGAAGGCCGGATTCAGGTGAGG
AACTACGACAACAACGAAGGCAAACGCGTCTATGTAACGGAAGTGATTGCCGACAACGTTCGTTTTCTGGAGTCTCCGAA
TCGGGATAACAACGGTATGCGCGAAGAAGGCGGCAGCGGTAACTACGGCGGCGGCGGCGGTACCGGCGGATCGGGAAGCG
GATTCGGCGGCGGCTCCTCATATGGCGGCGGCAACCGGCCAAGCGGCGGTTCACGTAACGACAATCGTGACCCGTTCTCG
GACGACGGTCGACCGATCGACATTTCGGAAGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5NIC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.25

100

0.566
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.503

Multiple sequence alignment