Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BIS30_RS05375 Genome accession   NZ_CP011051
Coordinates   981635..982279 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus spizizenii strain T30     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 976635..987279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS05340 (BIS30_05340) - 977831..978262 (+) 432 WP_003220732.1 Na(+)/H(+) antiporter subunit B -
  BIS30_RS05345 (BIS30_05345) - 978262..978603 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BIS30_RS05350 (BIS30_05350) - 978596..980077 (+) 1482 WP_003220728.1 Na+/H+ antiporter subunit D -
  BIS30_RS05355 (BIS30_05355) - 980172..980558 (+) 387 WP_235355634.1 Na+/H+ antiporter subunit E -
  BIS30_RS05360 (BIS30_05360) - 980558..980842 (+) 285 WP_003220724.1 Na(+)/H(+) antiporter subunit F1 -
  BIS30_RS05365 (BIS30_05365) mnhG 980826..981200 (+) 375 WP_003220721.1 monovalent cation/H(+) antiporter subunit G -
  BIS30_RS05370 (BIS30_05370) - 981239..981619 (-) 381 WP_003220719.1 hotdog fold thioesterase -
  BIS30_RS05375 (BIS30_05375) comA 981635..982279 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BIS30_RS05380 (BIS30_05380) comP 982360..984684 (-) 2325 WP_003220714.1 histidine kinase Regulator
  BIS30_RS05385 (BIS30_05385) comX 984692..984856 (-) 165 WP_003220712.1 competence pheromone ComX -
  BIS30_RS05390 (BIS30_05390) - 984869..985729 (-) 861 WP_003220710.1 polyprenyl synthetase family protein -
  BIS30_RS05395 (BIS30_05395) degQ 985914..986054 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BIS30_RS20855 - 986286..986402 (+) 117 WP_136975871.1 hypothetical protein -
  BIS30_RS05400 (BIS30_05400) - 986517..986885 (+) 369 WP_003220698.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=141770 BIS30_RS05375 WP_003220716.1 981635..982279(-) (comA) [Bacillus spizizenii strain T30]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=141770 BIS30_RS05375 WP_003220716.1 981635..982279(-) (comA) [Bacillus spizizenii strain T30]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAACCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATATTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGACTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGACGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGTTTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCAATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGATGGTGTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment