Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   VC76_RS07225 Genome accession   NZ_CP011015
Coordinates   1425786..1426097 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain FB1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420786..1431097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC76_RS07205 (VC76_07260) ctsE 1421653..1423215 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  VC76_RS07210 (VC76_07265) - 1423208..1423804 (-) 597 WP_002779313.1 CDC27 family protein -
  VC76_RS07215 (VC76_07270) ctsP 1423801..1424397 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  VC76_RS07220 (VC76_07275) ctsD 1424390..1425808 (-) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  VC76_RS07225 (VC76_07280) ctsR 1425786..1426097 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  VC76_RS07230 (VC76_07285) nifJ 1426121..1429681 (-) 3561 WP_002790306.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  VC76_RS07235 (VC76_07290) - 1429785..1430423 (-) 639 WP_002784063.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=141491 VC76_RS07225 WP_002779316.1 1425786..1426097(-) (ctsR) [Campylobacter coli strain FB1]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=141491 VC76_RS07225 WP_002779316.1 1425786..1426097(-) (ctsR) [Campylobacter coli strain FB1]
TTGTGTTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment