Detailed information NTG0141490

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: VC76_RS07220
• Genome accession: NZ_CP011015
• Coordinates: 1424390..1425808 (-)
• Length: 472 a.a.
• NCBI ID: WP_002833219.1
• Uniprot ID: -
• Organism: Campylobacter coli strain FB1
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1419390..1430808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VC76_RS07195 (VC76_07250)	-	1419730..1420494 (+)	765	WP_002781157.1	TSUP family transporter	-
VC76_RS07200 (VC76_07255)	ctsF	1420491..1421666 (-)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
VC76_RS07205 (VC76_07260)	ctsE	1421653..1423215 (-)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
VC76_RS07210 (VC76_07265)	-	1423208..1423804 (-)	597	WP_002779313.1	CDC27 family protein	-
VC76_RS07215 (VC76_07270)	ctsP	1423801..1424397 (-)	597	WP_002779314.1	ATP-binding protein	Machinery gene
VC76_RS07220 (VC76_07275)	ctsD	1424390..1425808 (-)	1419	WP_002833219.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
VC76_RS07225 (VC76_07280)	ctsR	1425786..1426097 (-)	312	WP_002779316.1	hypothetical protein	Machinery gene
VC76_RS07230 (VC76_07285)	nifJ	1426121..1429681 (-)	3561	WP_002790306.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
VC76_RS07235 (VC76_07290)	-	1429785..1430423 (-)	639	WP_002784063.1	HAD family hydrolase	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53455.02 Da
• Isoelectric Point: 6.7666

>NTDB_id=141490 VC76_RS07220 WP_002833219.1 1424390..1425808(-) (ctsD) [Campylobacter coli strain FB1]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVGNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=141490 VC76_RS07220 WP_002833219.1 1424390..1425808(-) (ctsD) [Campylobacter coli strain FB1]
ATGATAAGATTAATATTTATTAAGATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGGCAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-455)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.508	100	0.805