Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   VC76_RS06300 Genome accession   NZ_CP011015
Coordinates   1236909..1237559 (+) Length   216 a.a.
NCBI ID   WP_002780169.1    Uniprot ID   A0A0Q2GP61
Organism   Campylobacter coli strain FB1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231909..1242559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC76_RS06280 (VC76_06295) - 1232765..1234219 (-) 1455 WP_002780172.1 MotA/TolQ/ExbB proton channel family protein -
  VC76_RS06285 (VC76_06300) fbaA 1234318..1235382 (-) 1065 WP_002777549.1 class II fructose-bisphosphate aldolase -
  VC76_RS06290 (VC76_06305) - 1235382..1236203 (-) 822 WP_002777551.1 peptidylprolyl isomerase -
  VC76_RS06295 (VC76_06310) nth 1236286..1236912 (+) 627 WP_002777553.1 endonuclease III -
  VC76_RS06300 (VC76_06315) CJE1441 1236909..1237559 (+) 651 WP_002780169.1 DNA/RNA non-specific endonuclease Regulator
  VC76_RS06305 (VC76_06320) - 1237569..1238201 (+) 633 WP_002780167.1 trimeric intracellular cation channel family protein -
  VC76_RS06310 (VC76_06325) - 1238280..1238498 (+) 219 WP_002780165.1 EexN family lipoprotein -
  VC76_RS06315 (VC76_06330) cmoA 1238502..1239206 (-) 705 WP_002780163.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  VC76_RS06320 (VC76_06335) - 1239210..1240046 (-) 837 WP_002780161.1 bifunctional riboflavin kinase/FAD synthetase -
  VC76_RS06325 (VC76_06340) - 1240015..1240764 (-) 750 WP_002777566.1 TlyA family RNA methyltransferase -
  VC76_RS06330 (VC76_06345) - 1240761..1241765 (-) 1005 WP_002786117.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25080.76 Da        Isoelectric Point: 9.7703

>NTDB_id=141482 VC76_RS06300 WP_002780169.1 1236909..1237559(+) (CJE1441) [Campylobacter coli strain FB1]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYTNCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=141482 VC76_RS06300 WP_002780169.1 1236909..1237559(+) (CJE1441) [Campylobacter coli strain FB1]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATACCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTGAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2GP61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

66.497

91.204

0.606
  CJE0566 Campylobacter jejuni RM1221

65.99

91.204

0.602

Multiple sequence alignment