Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   UP12_RS14945 Genome accession   NZ_CP011007
Coordinates   2934107..2934748 (-) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus strain SH-B9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2929107..2939748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS14910 (UP12_14925) - 2930238..2930669 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  UP12_RS14915 (UP12_14930) - 2930669..2931010 (+) 342 WP_058013796.1 Na(+)/H(+) antiporter subunit C -
  UP12_RS14920 (UP12_14935) - 2931003..2932481 (+) 1479 WP_058013795.1 Na+/H+ antiporter subunit D -
  UP12_RS14925 (UP12_14940) - 2932488..2932967 (+) 480 WP_058013794.1 Na+/H+ antiporter subunit E -
  UP12_RS14930 (UP12_14945) - 2932967..2933248 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  UP12_RS14935 (UP12_14950) mnhG 2933232..2933606 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  UP12_RS14940 (UP12_14955) - 2933694..2934083 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  UP12_RS14945 (UP12_14960) comA 2934107..2934748 (-) 642 WP_058013793.1 response regulator transcription factor Regulator
  UP12_RS14950 (UP12_14965) comP 2934829..2937144 (-) 2316 WP_061409478.1 ATP-binding protein Regulator
  UP12_RS19970 comX 2937202..2937369 (-) 168 WP_081042274.1 competence pheromone ComX -
  UP12_RS14955 (UP12_14970) - 2937366..2938280 (-) 915 WP_061409480.1 polyprenyl synthetase family protein -
  UP12_RS14960 (UP12_14975) degQ 2938432..2938572 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  UP12_RS14965 (UP12_14980) - 2939078..2939431 (+) 354 WP_058013790.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=141345 UP12_RS14945 WP_058013793.1 2934107..2934748(-) (comA) [Bacillus pumilus strain SH-B9]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=141345 UP12_RS14945 WP_058013793.1 2934107..2934748(-) (comA) [Bacillus pumilus strain SH-B9]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAACAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCAATTGAATACAG
CTTGACATCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGTTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment