Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   UP12_RS10950 Genome accession   NZ_CP011007
Coordinates   2204680..2206416 (-) Length   578 a.a.
NCBI ID   WP_061408509.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2199680..2211416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS10930 (UP12_10930) - 2200558..2201658 (-) 1101 WP_058014715.1 Rap family tetratricopeptide repeat protein -
  UP12_RS10940 (UP12_10940) spo0A 2202115..2202918 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  UP12_RS10945 (UP12_10945) spoIVB 2203204..2204481 (-) 1278 WP_058014714.1 SpoIVB peptidase -
  UP12_RS10950 (UP12_10950) recN 2204680..2206416 (-) 1737 WP_061408509.1 DNA repair protein RecN Machinery gene
  UP12_RS10955 (UP12_10955) argR 2206450..2206899 (-) 450 WP_058014712.1 transcriptional regulator ArgR -
  UP12_RS10960 (UP12_10960) - 2207059..2207913 (-) 855 WP_061408512.1 TlyA family RNA methyltransferase -
  UP12_RS10965 (UP12_10965) dxs 2207910..2209811 (-) 1902 WP_061408514.1 1-deoxy-D-xylulose-5-phosphate synthase -
  UP12_RS10970 (UP12_10970) - 2209962..2210852 (-) 891 WP_061408517.1 polyprenyl synthetase family protein -
  UP12_RS10975 (UP12_10975) - 2210842..2211102 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64829.62 Da        Isoelectric Point: 4.7788

>NTDB_id=141332 UP12_RS10950 WP_061408509.1 2204680..2206416(-) (recN) [Bacillus pumilus strain SH-B9]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDATDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTNVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=141332 UP12_RS10950 WP_061408509.1 2204680..2206416(-) (recN) [Bacillus pumilus strain SH-B9]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCAGGGAATTGACGCAACTGATGAAATGATGATCCTTCGCCGTGATATTAACAATAACGGGAAAAGCATTTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTG
TCACAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAAAT
GGTGCACCGATTAGATTTATTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAGATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATTAACGACGATCTAAAAAA
GCTTTCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTTCAAATGCGAAGCATGCTGGATCAATTAG
AGTTTGACCCAGCACGCCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAGCGAAAGTACGGGACGACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGGGACAGTCATCTGCAGAC
ACTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACATTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGGAAAAACGGAATTGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCTTCTGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAGGTCACTTCCATTATTTTCGATGAGGTGGATACA
GGCGTAAGCGGCAGAGTTGCACAGGCAATTGCCGAAAAAATTTATAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCATCTCCCGCAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCGAAACGCTCTAAAGCTGGTAGAACACTGACAA
ACGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTCGAAGTCACTGAGCTGACA
AAACAGCATGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.087

100

0.751

Multiple sequence alignment