Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   UP12_RS10940 Genome accession   NZ_CP011007
Coordinates   2202115..2202918 (-) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain SH-B9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197115..2207918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS10920 (UP12_10920) - 2199324..2199560 (+) 237 WP_058014717.1 DUF2627 domain-containing protein -
  UP12_RS10925 (UP12_10925) - 2199595..2200332 (-) 738 WP_061408506.1 glycerophosphodiester phosphodiesterase -
  UP12_RS10930 (UP12_10930) - 2200558..2201658 (-) 1101 WP_058014715.1 Rap family tetratricopeptide repeat protein -
  UP12_RS10940 (UP12_10940) spo0A 2202115..2202918 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  UP12_RS10945 (UP12_10945) spoIVB 2203204..2204481 (-) 1278 WP_058014714.1 SpoIVB peptidase -
  UP12_RS10950 (UP12_10950) recN 2204680..2206416 (-) 1737 WP_061408509.1 DNA repair protein RecN Machinery gene
  UP12_RS10955 (UP12_10955) argR 2206450..2206899 (-) 450 WP_058014712.1 transcriptional regulator ArgR -
  UP12_RS10960 (UP12_10960) - 2207059..2207913 (-) 855 WP_061408512.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=141331 UP12_RS10940 WP_003215740.1 2202115..2202918(-) (spo0A) [Bacillus pumilus strain SH-B9]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=141331 UP12_RS10940 WP_003215740.1 2202115..2202918(-) (spo0A) [Bacillus pumilus strain SH-B9]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGCCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGGGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGTGTACCTGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGGGTCGAAC
GAGCAATTCGTCATGCGATTGAAGTGGCTTGGAGTAGAGGAAACATCGACTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATCGCAATGGTGGCTGACCGTCTCCGCTTGGAGCATCGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884

Multiple sequence alignment