Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UP12_RS07840 Genome accession   NZ_CP011007
Coordinates   1595124..1596026 (+) Length   300 a.a.
NCBI ID   WP_058014001.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1590124..1601026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS07820 (UP12_07825) - 1590790..1592526 (+) 1737 WP_061407809.1 hypothetical protein -
  UP12_RS07825 (UP12_07830) - 1592523..1592798 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  UP12_RS07830 (UP12_07835) sucC 1592975..1594135 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  UP12_RS07835 (UP12_07840) sucD 1594158..1595060 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  UP12_RS07840 (UP12_07845) dprA 1595124..1596026 (+) 903 WP_058014001.1 DNA-processing protein DprA Machinery gene
  UP12_RS07845 (UP12_07850) topA 1596220..1598295 (+) 2076 WP_058014000.1 type I DNA topoisomerase -
  UP12_RS07850 (UP12_07855) trmFO 1598366..1599670 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  UP12_RS07855 (UP12_07860) xerC 1599733..1600650 (+) 918 WP_058013999.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34034.36 Da        Isoelectric Point: 8.5942

>NTDB_id=141325 UP12_RS07840 WP_058014001.1 1595124..1596026(+) (dprA) [Bacillus pumilus strain SH-B9]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGIAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPAKLIQQGAKLVHSTKDILEEFSFRGVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=141325 UP12_RS07840 WP_058014001.1 1595124..1596026(+) (dprA) [Bacillus pumilus strain SH-B9]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGAATCGCACAC
AAAGAGTGCATTAGGAATAAAGGGAAAACGATTGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGATTAATTAGTGCGCTAACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAAACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCGGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.236

96

0.377

Multiple sequence alignment