Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   UP12_RS04300 Genome accession   NZ_CP011007
Coordinates   909449..910240 (+) Length   263 a.a.
NCBI ID   WP_061407133.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 904449..915240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS04265 (UP12_04260) - 904536..905084 (+) 549 WP_058015766.1 thioredoxin family protein -
  UP12_RS04270 (UP12_04265) - 905422..905889 (+) 468 WP_058015767.1 DUF393 domain-containing protein -
  UP12_RS04275 (UP12_04270) - 905926..907182 (-) 1257 WP_061407125.1 transcriptional regulator -
  UP12_RS04285 (UP12_04280) - 907455..908042 (+) 588 WP_061407129.1 nitroreductase -
  UP12_RS04290 (UP12_04285) - 908078..908233 (-) 156 WP_003217852.1 YfhD family protein -
  UP12_RS19755 - 908295..908405 (-) 111 WP_017358836.1 YfhE family protein -
  UP12_RS04295 (UP12_04290) - 908458..909354 (-) 897 WP_061407131.1 TIGR01777 family oxidoreductase -
  UP12_RS04300 (UP12_04295) recX 909449..910240 (+) 792 WP_061407133.1 recombination regulator RecX Regulator
  UP12_RS04305 (UP12_04300) - 910244..910558 (+) 315 WP_061407135.1 YfhH family protein -
  UP12_RS19760 - 910581..910754 (-) 174 WP_003217811.1 YpzG family protein -
  UP12_RS04310 (UP12_04305) - 910780..910929 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  UP12_RS04315 (UP12_04310) - 911046..911318 (+) 273 WP_003217809.1 YfhJ family protein -
  UP12_RS04320 (UP12_04315) - 911608..912591 (+) 984 WP_061407137.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30693.07 Da        Isoelectric Point: 6.6679

>NTDB_id=141307 UP12_RS04300 WP_061407133.1 909449..910240(+) (recX) [Bacillus pumilus strain SH-B9]
MPYITKISAQKNNTERVNVFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDNIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFEIIDKALQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKRMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=141307 UP12_RS04300 WP_061407133.1 909449..910240(+) (recX) [Bacillus pumilus strain SH-B9]
ATGCCCTATATTACAAAAATCTCCGCTCAAAAAAACAATACAGAGCGGGTAAACGTCTTTCTTGATGAAAAGTACGCCTT
TAGCGTGGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAGGGAAAAGAGCTGGATGAAGCCGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTC
ACAGATTACTTGACGAAAAAAGAAATCCCGGCACCTGCCATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTCAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGGATAGATGATGACAACATTGAACAAGCACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAGCGAAAAGGATTTTCGTTTGAGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCGCTCCTTTATATGATGGAGAAGGCAAAACGAAAGGTAGGATACGACGGATCATTTGAAAAGAGGATGAAG
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.357

100

0.624

Multiple sequence alignment