Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC12_RS06995 Genome accession   NZ_CP010998
Coordinates   1342099..1342494 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FORC_012 isolate human sputum     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1337099..1347494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC12_RS06970 (FORC12_1249) thiE 1337698..1338339 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  FORC12_RS06975 (FORC12_1250) thiM 1338341..1339132 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  FORC12_RS06980 (FORC12_1251) thiD 1339116..1339946 (-) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FORC12_RS06985 (FORC12_1252) tenA 1339939..1340628 (-) 690 WP_000396064.1 thiaminase II -
  FORC12_RS06990 (FORC12_1253) sceD 1341015..1341710 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  FORC12_RS06995 (FORC12_1254) ssb 1342099..1342494 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  FORC12_RS07000 (FORC12_1255) - 1342688..1343128 (+) 441 WP_000846746.1 YwpF-like family protein -
  FORC12_RS07005 (FORC12_1256) fabZ 1343186..1343626 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FORC12_RS07010 (FORC12_1257) murA 1343660..1344925 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FORC12_RS07015 (FORC12_1258) - 1345036..1345269 (-) 234 WP_000384523.1 DUF1146 family protein -
  FORC12_RS07020 - 1345401..1345493 (-) 93 WP_031824610.1 hypothetical protein -
  FORC12_RS07025 (FORC12_1259) - 1345829..1346233 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=141182 FORC12_RS06995 WP_000932694.1 1342099..1342494(-) (ssb) [Staphylococcus aureus strain FORC_012 isolate human sputum]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=141182 FORC12_RS06995 WP_000932694.1 1342099..1342494(-) (ssb) [Staphylococcus aureus strain FORC_012 isolate human sputum]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment