Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CIG2463D_RS06340 Genome accession   NZ_CP010995
Coordinates   1229600..1230361 (-) Length   253 a.a.
NCBI ID   WP_058893400.1    Uniprot ID   -
Organism   Campylobacter iguaniorum strain 2463D     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1224600..1235361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIG2463D_RS06310 (CIG2463D_1255) tatB 1224887..1225357 (+) 471 WP_038454577.1 Sec-independent protein translocase protein TatB -
  CIG2463D_RS06315 (CIG2463D_1256) tatC 1225357..1226118 (+) 762 WP_038454578.1 twin-arginine translocase subunit TatC -
  CIG2463D_RS06320 (CIG2463D_1257) queA 1226111..1227127 (+) 1017 WP_058893396.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CIG2463D_RS06325 (CIG2463D_1258) - 1227137..1228360 (+) 1224 WP_058893397.1 hypothetical protein -
  CIG2463D_RS06330 (CIG2463D_1259) - 1228357..1229226 (-) 870 WP_058893398.1 SAM-dependent methyltransferase -
  CIG2463D_RS06335 (CIG2463D_1260) ruvX 1229223..1229600 (-) 378 WP_058893399.1 Holliday junction resolvase RuvX -
  CIG2463D_RS06340 (CIG2463D_1261) dprA 1229600..1230361 (-) 762 WP_058893400.1 DNA-processing protein DprA Machinery gene
  CIG2463D_RS06345 (CIG2463D_1262) - 1230345..1231457 (-) 1113 WP_058893401.1 divergent polysaccharide deacetylase family protein -
  CIG2463D_RS06350 (CIG2463D_1263) ilvC 1231458..1232480 (-) 1023 WP_038454584.1 ketol-acid reductoisomerase -
  CIG2463D_RS06355 (CIG2463D_1264) - 1232624..1233436 (+) 813 WP_038454585.1 HDOD domain-containing protein -
  CIG2463D_RS06360 (CIG2463D_1265) - 1233433..1235361 (+) 1929 WP_058893402.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28022.23 Da        Isoelectric Point: 6.2560

>NTDB_id=141148 CIG2463D_RS06340 WP_058893400.1 1229600..1230361(-) (dprA) [Campylobacter iguaniorum strain 2463D]
MDFITKLPSELDRLKKPVQKLYYKGNLELLNLPKVAIVGARKCTPYTKNLVISLASSLRKHGVCVLSGGAIGVDNYAHEG
AFPLTIGIFGNGLDGIYPVQNAKMINQIYSNSLALSEYEPDFKAHSWSFLERNRIVVALSQAVVIAQADFKSGSMASARL
ALDMGIPLFVLPQRLEDSRGTNSLLAKNQANLIDDFDAFSAKFGSLYQEDDEILSFIKINSSFDECYAKFGDKLYEYELE
SKIAIDGIYVRVV

Nucleotide


Download         Length: 762 bp        

>NTDB_id=141148 CIG2463D_RS06340 WP_058893400.1 1229600..1230361(-) (dprA) [Campylobacter iguaniorum strain 2463D]
ATGGACTTTATAACTAAACTCCCAAGCGAGCTTGACAGGCTCAAAAAGCCAGTCCAAAAACTCTATTATAAAGGCAATTT
AGAGCTTTTAAATTTACCAAAAGTAGCCATTGTTGGAGCTAGAAAATGCACTCCATATACAAAAAATTTGGTTATCTCTC
TTGCTTCAAGCCTTAGAAAACACGGTGTTTGCGTACTTAGTGGCGGAGCTATCGGGGTTGATAACTACGCTCATGAAGGA
GCTTTTCCACTTACTATAGGTATCTTTGGAAATGGACTTGATGGAATTTACCCAGTTCAAAATGCAAAAATGATAAATCA
AATTTACTCAAATTCTCTTGCTCTAAGTGAGTATGAGCCAGATTTTAAGGCTCATTCTTGGAGCTTTTTGGAGAGAAATC
GCATAGTCGTAGCTCTAAGCCAGGCTGTAGTAATCGCTCAAGCCGATTTCAAAAGTGGCTCAATGGCTAGTGCTAGGCTT
GCTTTGGATATGGGAATCCCGCTCTTTGTCTTGCCTCAAAGGCTTGAAGATAGCAGGGGTACAAACTCGCTTCTAGCTAA
AAATCAAGCAAATTTAATAGATGATTTTGACGCTTTTAGTGCTAAATTTGGAAGTTTATATCAAGAAGATGATGAGATTT
TGAGTTTTATCAAAATAAATTCAAGCTTTGATGAATGCTATGCTAAATTTGGCGACAAGCTTTACGAATACGAATTAGAG
TCCAAAATCGCCATTGATGGCATTTATGTAAGGGTTGTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.466

91.7

0.518
  dprA Helicobacter pylori 26695

49.798

97.628

0.486

Multiple sequence alignment