Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SCVJan_RS27985 Genome accession   NZ_CP013478
Coordinates   5935489..5936163 (-) Length   224 a.a.
NCBI ID   WP_003117160.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SCVJan     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5930489..5941163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCVJan_RS27955 (SCVJan_5521) - 5930663..5931997 (+) 1335 WP_004347287.1 aspartate aminotransferase family protein -
  SCVJan_RS27960 (SCVJan_5522) - 5932063..5932425 (+) 363 WP_003096551.1 cupin domain-containing protein -
  SCVJan_RS27965 (SCVJan_5523) rpmG 5932560..5932715 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  SCVJan_RS27970 (SCVJan_5524) rpmB 5932727..5932963 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  SCVJan_RS27975 (SCVJan_5525) - 5933318..5934898 (+) 1581 WP_003117158.1 ABC transporter substrate-binding protein -
  SCVJan_RS27980 (SCVJan_5526) - 5934924..5935472 (+) 549 WP_003098290.1 hypothetical protein -
  SCVJan_RS27985 (SCVJan_5527) radC 5935489..5936163 (-) 675 WP_003117160.1 RadC family protein Machinery gene
  SCVJan_RS27990 (SCVJan_5528) coaBC 5936303..5937511 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  SCVJan_RS27995 (SCVJan_5529) dut 5937519..5937974 (+) 456 WP_003098293.1 dUTP diphosphatase -
  SCVJan_RS28000 (SCVJan_5530) - 5938011..5940617 (+) 2607 WP_003114359.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24888.65 Da        Isoelectric Point: 7.2089

>NTDB_id=140959 SCVJan_RS27985 WP_003117160.1 5935489..5936163(-) (radC) [Pseudomonas aeruginosa strain SCVJan]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVAGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=140959 SCVJan_RS27985 WP_003117160.1 5935489..5936163(-) (radC) [Pseudomonas aeruginosa strain SCVJan]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGGCCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397