Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CFTSP3_RS07165 Genome accession   NZ_CP010953
Coordinates   1442393..1443337 (+) Length   314 a.a.
NCBI ID   WP_058909491.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum Sp3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437393..1448337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFTSP3_RS07145 (CFTSP3_1434) - 1438039..1439094 (-) 1056 WP_058909487.1 glycosyltransferase family 4 protein -
  CFTSP3_RS07150 (CFTSP3_1435) - 1439091..1440011 (-) 921 WP_058909488.1 glycosyltransferase family 9 protein -
  CFTSP3_RS07155 (CFTSP3_1436) - 1439986..1441290 (-) 1305 WP_058909489.1 hypothetical protein -
  CFTSP3_RS07160 (CFTSP3_1437) - 1441378..1442409 (+) 1032 WP_058909490.1 glycosyltransferase family 4 protein -
  CFTSP3_RS07165 (CFTSP3_1438) waaF 1442393..1443337 (+) 945 WP_058909491.1 lipopolysaccharide heptosyltransferase II Regulator
  CFTSP3_RS07170 (CFTSP3_1439) gmhA 1443303..1443866 (-) 564 WP_058909492.1 D-sedoheptulose 7-phosphate isomerase -
  CFTSP3_RS07175 (CFTSP3_1440) rfaE1 1443869..1445245 (-) 1377 WP_023385770.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CFTSP3_RS07180 (CFTSP3_1441) rfaD 1445238..1446206 (-) 969 WP_058909493.1 ADP-glyceromanno-heptose 6-epimerase -
  CFTSP3_RS07185 (CFTSP3_1442) gmhB 1446203..1446709 (-) 507 WP_058909494.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  CFTSP3_RS07190 (CFTSP3_1443) - 1446840..1447154 (+) 315 WP_058909495.1 c-type cytochrome -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35659.82 Da        Isoelectric Point: 9.4464

>NTDB_id=140872 CFTSP3_RS07165 WP_058909491.1 1442393..1443337(+) (waaF) [Campylobacter fetus subsp. testudinum Sp3]
MRILIELPTWLGDAVMASAAVQSLALNYPNCKITFFGSEISTSIYSSYPNCENIIIDNSKKAKFRLFYLLKTALNLDKFD
IAVSFRSHFYSKVFFKFIKADKKAIFTPTKNEIHQVQKYMNFIINCLSLKQSIDELKLYFAPFKFKNKTLGLNPGASYGS
AKRWYPQYFADVAINLKKSYEVVIFGGKNEQNICDEIALELEKNGVKYQNLCNKTTICELASFIAGLDMFITNDSGPMHI
AAAFKVPTIALFGPTKFKETSPYKNNNAKILHLDLGCMPCMKRVCPLNSHECMKNLTPKMVLDAIYKLNPQLDK

Nucleotide


Download         Length: 945 bp        

>NTDB_id=140872 CFTSP3_RS07165 WP_058909491.1 1442393..1443337(+) (waaF) [Campylobacter fetus subsp. testudinum Sp3]
ATGCGCATACTAATTGAGCTGCCCACATGGCTAGGTGACGCCGTGATGGCAAGCGCTGCTGTTCAAAGTCTAGCCCTAAA
CTATCCAAACTGCAAGATAACCTTTTTTGGATCAGAGATTAGCACGAGTATCTACAGCTCTTATCCAAACTGTGAAAATA
TCATTATCGATAATTCAAAAAAAGCTAAGTTCAGACTGTTTTATCTGCTAAAAACAGCTTTAAATTTAGATAAATTTGAT
ATAGCCGTAAGTTTTAGAAGTCACTTTTACTCAAAAGTATTTTTTAAATTTATAAAAGCAGACAAAAAAGCTATTTTTAC
ACCTACAAAAAATGAAATTCATCAGGTACAAAAATATATGAATTTTATTATCAATTGTCTGAGTTTAAAACAAAGCATAG
ATGAGCTAAAACTGTATTTTGCTCCTTTTAAATTTAAAAACAAAACTCTAGGGCTAAATCCAGGAGCAAGCTATGGAAGC
GCGAAAAGATGGTATCCGCAGTACTTTGCAGATGTAGCTATAAATTTAAAAAAGAGTTATGAAGTTGTCATTTTTGGAGG
AAAAAATGAACAAAATATCTGCGACGAAATAGCATTAGAACTTGAAAAAAACGGAGTAAAATACCAAAATTTATGTAACA
AAACCACTATTTGTGAGCTAGCAAGCTTTATAGCAGGTCTTGATATGTTTATCACTAACGATAGCGGTCCTATGCACATA
GCAGCAGCTTTTAAAGTGCCTACTATAGCACTTTTTGGACCTACTAAGTTCAAAGAAACCTCTCCATATAAAAATAACAA
TGCAAAGATACTACATCTTGATTTAGGCTGTATGCCCTGTATGAAGAGAGTTTGCCCTTTAAACTCACACGAATGTATGA
AAAATCTAACACCAAAAATGGTGCTAGATGCTATTTATAAGCTAAATCCACAGCTTGACAAATAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(137-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.243

99.682

0.481

Multiple sequence alignment