Detailed information NTG0140851

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: UC35_RS08515
• Genome accession: NZ_CP010951
• Coordinates: 1771660..1773069 (-)
• Length: 469 a.a.
• NCBI ID: WP_061498026.1
• Uniprot ID: A0A127JSP2
• Organism: Ramlibacter tataouinensis strain 5-10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1766660..1778069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UC35_RS08505 (UC35_08515)	-	1767899..1770766 (-)	2868	WP_265331340.1	ribonucleoside-diphosphate reductase subunit alpha	-
UC35_RS08510 (UC35_08520)	ampD	1771095..1771667 (-)	573	WP_061498024.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
UC35_RS08515 (UC35_08525)	pilR	1771660..1773069 (-)	1410	WP_061498026.1	sigma-54-dependent transcriptional regulator	Regulator
UC35_RS08520 (UC35_08530)	-	1773069..1774775 (-)	1707	WP_061498028.1	two-component system sensor histidine kinase NtrB	-
UC35_RS08525 (UC35_08535)	-	1774781..1775032 (-)	252	WP_321572382.1	PP0621 family protein	-
UC35_RS08530 (UC35_08540)	-	1775029..1775826 (-)	798	WP_061498033.1	inner membrane protein YpjD	-
UC35_RS08535 (UC35_08545)	ffh	1775910..1777292 (+)	1383	WP_061498035.1	signal recognition particle protein	-

Sequence

Protein

• Length: 469 a.a.
• Molecular weight: 51169.29 Da
• Isoelectric Point: 5.4116

>NTDB_id=140851 UC35_RS08515 WP_061498026.1 1771660..1773069(-) (pilR) [Ramlibacter tataouinensis strain 5-10]
MSATSTAQVLVVDDEPDLRTLYELTLLREGYRVDAAGSVAEAWQQLEAKRFDAVITDMRLPDGQGLELLQRMSQQQRPER
CIVMTAYGSAENAVEALKAGAFDYLTKPVDLRQFRNVVASAIQEVTPARGRVAARTAAPAERPTGGDAALQRLVGESQAV
RAVKERVAKVARSMAPVLVRGESGTGKELVARAIHACSHRADAPFVAVNCSAIPEALLEAEFFGAKKGSYTGSAADREGY
FQAARGGTLFLDEIGDLPLPMQSKLLRAIQERQVRPLGSTQEDAVDVRIVSATHKDLVADVQAARFRQDLYYRLNVIEIV
VPPLRERREDLPRLCEALLARIAQDTGVPAPVLTPEVMAQLWAHPLGGNVRELENLLHRAVALSDGHEMHLDLEPAAAPA
LAPEPEMPNDLQAWLDQKERDVLVKALQDSGFNRTAAAQRLGLTLRQIRYRIARLQIPVPGGADEGDDA

Nucleotide

• Length: 1410 bp

>NTDB_id=140851 UC35_RS08515 WP_061498026.1 1771660..1773069(-) (pilR) [Ramlibacter tataouinensis strain 5-10]
ATGTCCGCCACTTCCACCGCGCAGGTACTGGTCGTCGATGACGAACCCGACCTGCGCACGCTGTACGAGCTCACGCTGCT
GCGGGAGGGCTACCGCGTGGACGCCGCCGGCAGCGTGGCCGAGGCCTGGCAGCAGCTGGAGGCCAAGCGCTTCGACGCTG
TGATCACCGACATGCGCCTGCCCGACGGGCAGGGGCTGGAGCTGCTGCAGCGCATGTCGCAGCAGCAGCGGCCCGAGCGC
TGCATCGTCATGACCGCCTACGGTTCGGCCGAGAACGCCGTCGAGGCGCTCAAGGCCGGCGCCTTCGACTACCTCACCAA
GCCGGTCGACCTGCGGCAATTTCGCAACGTGGTCGCATCGGCGATCCAGGAAGTCACGCCGGCGCGCGGCCGCGTCGCGG
CGCGCACTGCCGCGCCGGCAGAGCGGCCGACCGGTGGCGATGCCGCCCTGCAGCGGCTGGTGGGGGAGTCCCAGGCCGTG
CGCGCCGTCAAGGAGCGCGTGGCCAAGGTGGCGCGCAGCATGGCGCCGGTGCTGGTGCGCGGCGAGTCCGGCACCGGCAA
GGAACTGGTGGCGCGGGCGATCCACGCCTGCAGCCACCGCGCCGACGCGCCCTTCGTGGCAGTGAACTGCAGCGCGATCC
CGGAGGCCCTGCTCGAAGCCGAGTTCTTCGGCGCCAAGAAGGGCTCCTACACCGGCTCGGCCGCCGACCGCGAGGGCTAC
TTCCAGGCGGCGCGCGGCGGCACGCTGTTCCTCGACGAGATCGGCGACCTGCCGCTGCCCATGCAGTCCAAGCTGCTGCG
CGCGATCCAGGAGCGCCAGGTGCGGCCGCTCGGCTCCACCCAAGAGGACGCCGTGGACGTGCGCATCGTCAGCGCCACGC
ACAAGGACCTGGTGGCCGACGTCCAGGCCGCCCGCTTCCGCCAGGACCTGTACTACCGCCTCAATGTCATCGAGATCGTG
GTGCCGCCGCTGCGCGAGCGCCGCGAGGACCTGCCGCGGCTGTGCGAGGCGCTGCTGGCGCGCATCGCGCAGGACACCGG
CGTGCCGGCGCCGGTGCTGACGCCGGAGGTGATGGCGCAGCTGTGGGCCCATCCGCTCGGCGGCAACGTGCGCGAGCTGG
AGAACCTGCTGCACCGTGCCGTCGCGCTGTCGGACGGTCATGAAATGCATCTGGACCTCGAGCCGGCAGCGGCTCCGGCG
CTGGCGCCGGAGCCCGAGATGCCGAACGACCTGCAGGCCTGGCTCGACCAGAAGGAGCGCGACGTCCTGGTGAAGGCGCT
GCAGGACAGCGGCTTCAACCGCACCGCCGCCGCGCAACGCCTGGGGCTGACGCTGCGCCAGATCCGGTATCGCATCGCGC
GCCTGCAGATTCCCGTGCCGGGCGGCGCCGACGAAGGCGACGATGCCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (417-454)

• Sigma-54 interaction domain (Sigma54_activat) (153-319)

• Response regulator receiver domain (Response_reg) (9-118)

3D structure

• AlphaFold DB: A0A127JSP2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.505	97.868	0.514
pilR	Acinetobacter baumannii strain A118	40.598	99.787	0.405