Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   UC78_RS06990 Genome accession   NZ_CP010906
Coordinates   1377817..1378998 (-) Length   393 a.a.
NCBI ID   WP_044306258.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372817..1383998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS06960 (UC78_1396) - 1373361..1373702 (+) 342 WP_002784057.1 hypothetical protein -
  UC78_RS06965 (UC78_1397) flgM 1373765..1373962 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  UC78_RS06970 (UC78_1398) - 1374005..1374439 (+) 435 WP_044306255.1 flagellar protein FlgN -
  UC78_RS06975 (UC78_1399) flgK 1374449..1376275 (+) 1827 WP_044306256.1 flagellar hook-associated protein FlgK -
  UC78_RS06980 (UC78_1400) - 1376292..1377056 (+) 765 WP_044306257.1 TIGR02757 family protein -
  UC78_RS06985 (UC78_1401) - 1377060..1377824 (+) 765 WP_002855301.1 TSUP family transporter -
  UC78_RS06990 (UC78_1402) ctsF 1377817..1378998 (-) 1182 WP_044306258.1 type II secretion system F family protein Machinery gene
  UC78_RS06995 (UC78_1403) ctsE 1378995..1380554 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  UC78_RS07000 (UC78_1404) ctsX 1380544..1381131 (-) 588 WP_002851370.1 membrane protein Machinery gene
  UC78_RS07005 (UC78_1405) ctsP 1381135..1381743 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  UC78_RS07010 (UC78_1406) ctsD 1381736..1383148 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UC78_RS07015 (UC78_1407) ctsR 1383126..1383437 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45689.28 Da        Isoelectric Point: 9.0938

>NTDB_id=140768 UC78_RS06990 WP_044306258.1 1377817..1378998(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain 35925]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVSFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=140768 UC78_RS06990 WP_044306258.1 1377817..1378998(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain 35925]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTTAGTTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment