Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   UC78_RS06755 Genome accession   NZ_CP010906
Coordinates   1329443..1330627 (-) Length   394 a.a.
NCBI ID   WP_044306231.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1324443..1335627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS06730 (UC78_1350) fliL 1325591..1326127 (+) 537 WP_044306228.1 flagellar basal body-associated protein FliL -
  UC78_RS06735 (UC78_1351) acpS 1326127..1326474 (+) 348 WP_002825806.1 holo-ACP synthase -
  UC78_RS06740 (UC78_1352) - 1326475..1326894 (-) 420 WP_002780440.1 hypothetical protein -
  UC78_RS06745 (UC78_1353) - 1326891..1328252 (-) 1362 WP_044306229.1 cytochrome P450 -
  UC78_RS06750 (UC78_1354) - 1328249..1329370 (-) 1122 WP_044306230.1 hypothetical protein -
  UC78_RS06755 (UC78_1355) kpsS 1329443..1330627 (-) 1185 WP_044306231.1 capsule polysaccharide modification protein KpsS Regulator
  UC78_RS06760 (UC78_1356) kpsC 1330624..1332693 (-) 2070 WP_044306232.1 capsular polysaccharide biosynthesis protein -
  UC78_RS06765 (UC78_1357) cysC 1332690..1333202 (-) 513 WP_044306233.1 cytidine diphosphoramidate kinase -
  UC78_RS06770 (UC78_1358) - 1333204..1333953 (-) 750 WP_044306234.1 CTP:phosphoglutamine cytidylyltransferase -
  UC78_RS06775 (UC78_1359) - 1333955..1334557 (-) 603 WP_002858074.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46838.51 Da        Isoelectric Point: 9.9073

>NTDB_id=140767 UC78_RS06755 WP_044306231.1 1329443..1330627(-) (kpsS) [Campylobacter jejuni subsp. jejuni strain 35925]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGSAFYDFEGLSYPKKLQFFWREAHAYKPNPILVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=140767 UC78_RS06755 WP_044306231.1 1329443..1330627(-) (kpsS) [Campylobacter jejuni subsp. jejuni strain 35925]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAGTGAAAATGAGAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGCGGAGATTTTTTTTTCT
ATCCTAGCGGAACGAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAATAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGACGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGTATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAGTGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTATTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.731

100

0.987


Multiple sequence alignment