Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UC78_RS03090 Genome accession   NZ_CP010906
Coordinates   598309..599082 (+) Length   257 a.a.
NCBI ID   WP_044305914.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 593309..604082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS03075 (UC78_0612) - 594158..596092 (-) 1935 WP_044305911.1 RNB domain-containing ribonuclease -
  UC78_RS03080 (UC78_0613) ilvC 596211..597233 (+) 1023 WP_044305912.1 ketol-acid reductoisomerase -
  UC78_RS03085 (UC78_0614) - 597237..598319 (+) 1083 WP_044305913.1 divergent polysaccharide deacetylase family protein -
  UC78_RS03090 (UC78_0615) dprA 598309..599082 (+) 774 WP_044305914.1 DNA-processing protein DprA Machinery gene
  UC78_RS03095 (UC78_0616) ruvX 599079..599462 (+) 384 WP_002871352.1 Holliday junction resolvase RuvX -
  UC78_RS03100 (UC78_0617) - 599491..600330 (+) 840 WP_079005346.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  UC78_RS03105 (UC78_0618) msrA 600506..601003 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  UC78_RS03110 (UC78_0619) ppa 601044..601562 (-) 519 WP_002855031.1 inorganic diphosphatase -
  UC78_RS03115 (UC78_0620) adk 601572..602150 (-) 579 WP_002855137.1 adenylate kinase -
  UC78_RS03120 (UC78_0621) aspS 602147..603898 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28834.67 Da        Isoelectric Point: 7.6510

>NTDB_id=140754 UC78_RS03090 WP_044305914.1 598309..599082(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 35925]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNVHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGFFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=140754 UC78_RS03090 WP_044305914.1 598309..599082(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 35925]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGTTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTAGTTGCGCAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGTTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment