Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PF1751_RS03890 | Genome accession | NZ_CP010896 |
| Coordinates | 875097..875963 (-) | Length | 288 a.a. |
| NCBI ID | WP_044286633.1 | Uniprot ID | - |
| Organism | Pseudomonas simiae strain PCL1751 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 870097..880963
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PF1751_RS03850 (PF1751_v1c07520) | - | 870519..871817 (-) | 1299 | WP_042571057.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PF1751_RS03855 (PF1751_v1c07530) | - | 871878..872051 (-) | 174 | WP_044286631.1 | DUF3094 family protein | - |
| PF1751_RS03860 (PF1751_v1c07540) | - | 872106..872735 (-) | 630 | WP_010213242.1 | DUF1780 domain-containing protein | - |
| PF1751_RS03865 (PF1751_v1c07550) | - | 872839..873306 (+) | 468 | WP_010213240.1 | hypothetical protein | - |
| PF1751_RS03870 (PF1751_v1c07560) | - | 873303..873992 (+) | 690 | WP_044286632.1 | energy-coupling factor ABC transporter permease | - |
| PF1751_RS03875 (PF1751_v1c07570) | - | 874068..874283 (+) | 216 | WP_003171680.1 | hypothetical protein | - |
| PF1751_RS03880 (PF1751_v1c07580) | yacG | 874280..874480 (-) | 201 | WP_003188437.1 | DNA gyrase inhibitor YacG | - |
| PF1751_RS03885 (PF1751_v1c07590) | coaE | 874477..875100 (-) | 624 | WP_010213235.1 | dephospho-CoA kinase | - |
| PF1751_RS03890 (PF1751_v1c07600) | pilD | 875097..875963 (-) | 867 | WP_044286633.1 | prepilin peptidase | Machinery gene |
| PF1751_RS03895 (PF1751_v1c07610) | pilC | 875960..877168 (-) | 1209 | WP_010213233.1 | type II secretion system F family protein | Machinery gene |
| PF1751_RS03900 (PF1751_v1c07620) | - | 877362..877784 (+) | 423 | WP_021491914.1 | pilin | - |
| PF1751_RS03905 (PF1751_v1c07630) | - | 877820..879220 (+) | 1401 | WP_044286634.1 | O-antigen ligase family protein | - |
| PF1751_RS03915 (PF1751_v1c07640) | - | 879487..879792 (+) | 306 | WP_010213230.1 | DUF6388 family protein | - |
| PF1751_RS03920 (PF1751_v1c07650) | nadC | 879840..880688 (-) | 849 | WP_010213228.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31677.89 Da Isoelectric Point: 8.2590
>NTDB_id=140686 PF1751_RS03890 WP_044286633.1 875097..875963(-) (pilD) [Pseudomonas simiae strain PCL1751]
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISPRYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHAPAPMPFGPYLAIAGWIALLWGGQITNFYLQSVGFR
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISPRYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHAPAPMPFGPYLAIAGWIALLWGGQITNFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=140686 PF1751_RS03890 WP_044286633.1 875097..875963(-) (pilD) [Pseudomonas simiae strain PCL1751]
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCCCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGCCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCAACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCCCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGCCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCAACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.763 |
96.875 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
50.357 |
97.222 |
0.49 |
| pilD | Acinetobacter nosocomialis M2 |
49.451 |
94.792 |
0.469 |
| pilD | Acinetobacter baumannii D1279779 |
49.084 |
94.792 |
0.465 |
| pilD | Neisseria gonorrhoeae MS11 |
48.889 |
93.75 |
0.458 |