Detailed information NTG0140571

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: vpachn25_RS12785
• Genome accession: NZ_CP010883
• Coordinates: 2813740..2814609 (+)
• Length: 289 a.a.
• NCBI ID: WP_065870908.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain CHN25
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2808740..2819609

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vpachn25_RS12765 (VpaChn25_2456)	nadC	2809128..2810015 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
vpachn25_RS12770 (VpaChn25_2457)	-	2810279..2810743 (+)	465	WP_021450016.1	pilin	-
vpachn25_RS12775 (VpaChn25_2458)	pilB	2810743..2812428 (+)	1686	WP_021450017.1	type IV-A pilus assembly ATPase PilB	Machinery gene
vpachn25_RS12780 (VpaChn25_2459)	pilC	2812452..2813675 (+)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
vpachn25_RS12785 (VpaChn25_2460)	pilD	2813740..2814609 (+)	870	WP_065870908.1	prepilin peptidase	Machinery gene
vpachn25_RS12790 (VpaChn25_2461)	coaE	2814610..2815224 (+)	615	WP_065870909.1	dephospho-CoA kinase	-
vpachn25_RS12795 (VpaChn25_2462)	zapD	2815252..2815992 (+)	741	WP_023624252.1	cell division protein ZapD	-
vpachn25_RS12800 (VpaChn25_2463)	yacG	2816061..2816255 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
vpachn25_RS12805 (VpaChn25_2464)	rplS	2816623..2816976 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
vpachn25_RS12810 (VpaChn25_2465)	trmD	2817018..2817761 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
vpachn25_RS12815 (VpaChn25_2466)	rimM	2817789..2818337 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
vpachn25_RS12820 (VpaChn25_2467)	rpsP	2818366..2818614 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32418.53 Da
• Isoelectric Point: 7.5706

>NTDB_id=140571 vpachn25_RS12785 WP_065870908.1 2813740..2814609(+) (pilD) [Vibrio parahaemolyticus strain CHN25]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFLAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQNAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=140571 vpachn25_RS12785 WP_065870908.1 2813740..2814609(+) (pilD) [Vibrio parahaemolyticus strain CHN25]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTTTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAAACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446